Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
☆14Feb 14, 2021Updated 5 years ago
Alternatives and similar repositories for CliHelpParser
Users that are interested in CliHelpParser are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- WDL plugin for pytest☆48Aug 1, 2023Updated 2 years ago
- Total Perspective Vortex provides an installable set of dynamic rules for the Galaxy application that can route entities (Tools, Users, R…☆16Updated this week
- WDL tools for parsing, type-checking, and more☆28May 2, 2026Updated 2 weeks ago
- Visualizer of CWL (Common Workflow Language) workflows for Vue☆30Dec 7, 2022Updated 3 years ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Apr 1, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- cache packages permanently☆16Oct 9, 2025Updated 7 months ago
- A collection of reusable WDL tasks. Category:Other☆89Apr 8, 2026Updated last month
- Galaxy Language Server to help in Galaxy (https://galaxyproject.org/) tool wrappers development.☆29Updated this week
- Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegal…☆14Updated this week
- Handy command line utility for Galaxy administrators☆24May 12, 2026Updated last week
- AWS Quick Start Team☆24Oct 3, 2024Updated last year
- Reference genome resource manager☆74Mar 6, 2026Updated 2 months ago
- A language server for Common Workflow Language☆64Dec 6, 2023Updated 2 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 4 years ago
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- Galaxy Image Analysis is an ELIXIR Service for computer-based image analysis in Galaxy.☆22May 11, 2026Updated last week
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 6 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago
- Workflow Execution Service Backend☆21May 4, 2026Updated 2 weeks ago
- Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…☆108Updated this week
- Standard operating procedures for H3ABionet data processing and analyses☆11Aug 30, 2021Updated 4 years ago
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆36May 28, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A set of metabolomics tools for use in Galaxy☆11Sep 2, 2022Updated 3 years ago
- A web tool that helps biomedical researchers understand how their work is being used by others, by analyzing the content in papers that c…☆13Oct 19, 2018Updated 7 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- (Deprecated) Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproje…☆11Nov 9, 2024Updated last year
- Somatic workflow for Kids-First☆15May 11, 2026Updated last week
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- Minimal setup required to run Galaxy under Kubernetes☆47May 12, 2026Updated last week
- Plot allele frequencies in VCF files☆11Apr 13, 2026Updated last month
- Workflow4Metabolomics meta repository☆11May 23, 2025Updated 11 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Nextflow Workshop at Rocky Mountain Genomics HackCon 2018☆10Jun 19, 2018Updated 7 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- A community menagarie of automated variant validations using bcbio and the Common Workflow Language☆21Nov 3, 2021Updated 4 years ago
- A cookiecutter template for a beamer presentation☆18Apr 16, 2020Updated 6 years ago
- A project to launch the galaxy docker image easily using ansible☆11Jan 22, 2020Updated 6 years ago
- A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs☆70May 27, 2022Updated 3 years ago
- Link molecular structures of chemicals (in form of topological fingerprints) with multiple targets☆11Dec 19, 2024Updated last year