Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
☆14Feb 14, 2021Updated 5 years ago
Alternatives and similar repositories for CliHelpParser
Users that are interested in CliHelpParser are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Total Perspective Vortex provides an installable set of dynamic rules for the Galaxy application that can route entities (Tools, Users, R…☆17Jul 2, 2026Updated 2 weeks ago
- WDL plugin for pytest☆49Aug 1, 2023Updated 2 years ago
- Visualizer of CWL (Common Workflow Language) workflows for Vue☆30Dec 7, 2022Updated 3 years ago
- cache packages permanently☆16Oct 9, 2025Updated 9 months ago
- WDL tools for parsing, type-checking, and more☆28May 2, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Galaxy Language Server to help in Galaxy (https://galaxyproject.org/) tool wrappers development.☆29Updated this week
- Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegal…☆14Updated this week
- AWS Quick Start Team☆24Oct 3, 2024Updated last year
- Handy command line utility for Galaxy administrators☆24May 12, 2026Updated 2 months ago
- A language server for Common Workflow Language☆64Dec 6, 2023Updated 2 years ago
- Reference genome resource manager☆75Mar 6, 2026Updated 4 months ago
- A web tool that helps biomedical researchers understand how their work is being used by others, by analyzing the content in papers that c…☆13Oct 19, 2018Updated 7 years ago
- A collection of reusable WDL tasks. Category:Other☆89Apr 8, 2026Updated 3 months ago
- Variant to disease dataset workflows for Open Targets Genetics☆14May 11, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Workflow Execution Service Backend☆21Updated this week
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 4 years ago
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 6 years ago
- Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…☆107Updated this week
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago
- Standard operating procedures for H3ABionet data processing and analyses☆11Aug 30, 2021Updated 4 years ago
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆36May 28, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A set of metabolomics tools for use in Galaxy☆11Sep 2, 2022Updated 3 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- (Deprecated) Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproje…☆11Nov 9, 2024Updated last year
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- Somatic workflow for Kids-First☆15Updated this week
- Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility☆18Aug 5, 2021Updated 4 years ago
- Workflow4Metabolomics meta repository☆11May 23, 2025Updated last year
- A community menagarie of automated variant validations using bcbio and the Common Workflow Language☆21Nov 3, 2021Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A project to launch the galaxy docker image easily using ansible☆11Jan 22, 2020Updated 6 years ago
- A cookiecutter template for a beamer presentation☆18Apr 16, 2020Updated 6 years ago
- usegalaxy.* common tools☆22Updated this week
- A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs☆70May 27, 2022Updated 4 years ago
- Configure workflow/pipeline tests using yaml files.☆70Aug 4, 2024Updated last year
- Galaxy Tools for Computational Chemistry☆16Mar 25, 2025Updated last year
- Link molecular structures of chemicals (in form of topological fingerprints) with multiple targets☆11Dec 19, 2024Updated last year