aCLImatise / CliHelpParser
Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
☆14Updated 4 years ago
Alternatives and similar repositories for CliHelpParser:
Users that are interested in CliHelpParser are comparing it to the libraries listed below
- ☆13Updated 7 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 5 years ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 2 months ago
- WDL plugin for pytest☆48Updated last year
- Malleable All-seeing Journal Of Research Artifacts☆36Updated last year
- Demonstrating best practices for bioinformatics command line tools☆26Updated 4 years ago
- RNAsik - more than just a pipeline☆13Updated last year
- deploy a snakemake pipeline directly from version control (under development)☆22Updated 2 months ago
- Testing building mulled containers for multi-requirement tools.☆70Updated this week
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆28Updated 3 weeks ago
- Galaxy tools and workflows developed at the Earlham Institute☆14Updated this week
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- cache packages permanently☆13Updated 7 months ago
- Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)☆14Updated 2 weeks ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 6 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- List of tools included in https://usegalaxy.eu☆26Updated this week
- Access nextflow variables from python scripts or notebooks☆21Updated 3 years ago
- Bioinformatics curated workflows that use Biocontainers tools☆18Updated 5 years ago
- Open-source opinionated Galaxy-based framework for microbiota analysis☆14Updated 4 years ago
- A job submitter for Portable Encapsulated Projects☆21Updated 2 weeks ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 5 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Updated 5 years ago
- ☆13Updated 6 years ago
- Portable WDL workflows for IDseq production pipelines☆31Updated 3 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 6 months ago
- This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many p…☆33Updated 3 years ago