gogetdata / ggd-cliLinks
The command-line interface to GGD
☆43Updated 2 years ago
Alternatives and similar repositories for ggd-cli
Users that are interested in ggd-cli are comparing it to the libraries listed below
Sorting:
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Making Snakemake workflows into full-fledged command line tools since 1999.☆52Updated 7 years ago
- conda recipes for genomic data☆85Updated 4 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated last month
- Please consider using/contributing to https://github.com/nf-core/sarek☆40Updated 4 years ago
- Intersect multiple VCF files with haplotype awareness☆25Updated 4 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- A fast, easy way to present complex bioinformatics pipelines to biologists☆11Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- Genomic data interpretation and visualization Workshop☆21Updated 2 weeks ago
- Documentation of the Snakemake-Profiles project.☆55Updated 3 years ago
- Genomic VCF to tab-separated values☆47Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- A web based tool to manage and automate the processing of publicly available datasets.☆40Updated 4 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 4 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆36Updated last month
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆25Updated last year
- Interactive eQTL visualizations☆13Updated 2 years ago
- interactive plots for differential expression analysis☆32Updated last month
- Demonstrating best practices for bioinformatics command line tools☆26Updated 5 years ago
- Useful tools for working with Salmon output☆38Updated 5 years ago
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated 3 months ago
- Exploration, clustering, visualization and classification of DNA damage patterns☆19Updated 4 years ago