TimoLassmann / samstat
SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
☆24Updated last year
Alternatives and similar repositories for samstat:
Users that are interested in samstat are comparing it to the libraries listed below
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- A tutorial on structural variant calling for short read sequencing data☆26Updated 3 months ago
- ☆20Updated 2 years ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆33Updated last month
- Find Unique genomic Regions☆29Updated 3 weeks ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 5 months ago
- Generate unique KMERs for every contig in a FASTA file☆45Updated 2 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆20Updated 3 months ago
- toolkit to process gtf files☆16Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- Improved Phased Assembler☆27Updated 2 years ago
- catalog for long-read sequencing tools☆32Updated last year
- ☆24Updated 3 years ago
- perSVade: personalized Structural Variation detection☆38Updated 2 months ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- python plotly Circos from VCF☆31Updated 7 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆32Updated last year
- Structural variant (SV) analysis tools☆35Updated 6 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last month
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 5 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated last year
- Command line tool to plot genomic coverage from a BAM file☆13Updated last year
- WDL workflows for variant calling and assembly using ONT☆30Updated this week