TimoLassmann / samstat
SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
☆24Updated last year
Related projects ⓘ
Alternatives and complementary repositories for samstat
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- ☆20Updated 2 years ago
- Improved Phased Assembler☆28Updated 2 years ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- perSVade: personalized Structural Variation detection☆37Updated 5 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆54Updated this week
- catalog for long-read sequencing tools☆32Updated last year
- A tutorial on structural variant calling for short read sequencing data☆26Updated 3 weeks ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- python plotly Circos from VCF☆31Updated 5 months ago
- Find Unique genomic Regions☆29Updated this week
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- WDL workflows for variant calling and assembly using ONT☆28Updated last month
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated last year
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆18Updated last week
- new repo☆27Updated 3 years ago
- Structural variant caller☆54Updated 2 years ago
- Working space for the GIAB TR benchmarking project☆20Updated 3 weeks ago
- Structural variant (SV) analysis tools☆36Updated 4 months ago
- Transposable Elements MOvement detection using LOng reads☆19Updated this week
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆38Updated this week
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆29Updated 3 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆19Updated 3 weeks ago
- Generate unique KMERs for every contig in a FASTA file☆43Updated 2 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 2 years ago