Alternatives and similar repositories for samstat:

Users that are interested in samstat are comparing it to the libraries listed below

• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 3 years ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆36Updated 9 months ago
• dvdylus / read2tree
  ☆20Updated 3 years ago
• tobiasrausch / vc
  A tutorial on structural variant calling for short read sequencing data
  ☆32Updated 5 months ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆48Updated 5 years ago
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆60Updated 4 years ago
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated this week
• WGLab / LongReadSum
  ☆17Updated 3 weeks ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated 3 weeks ago
• biocorecrg / MOP2
  Master of Pores 2
  ☆23Updated 4 months ago
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆33Updated this week
• epi2me-labs / fastcat
  Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.
  ☆36Updated 3 weeks ago
• rsemeraro / PyPore
  A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data
  ☆20Updated 2 years ago
• B-UMMI / long-read-catalog
  catalog for long-read sequencing tools
  ☆32Updated 2 years ago
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆21Updated 5 months ago
• broadinstitute / GATK-for-Microbes
  ☆26Updated 3 years ago
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆31Updated 6 years ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆65Updated 2 weeks ago
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆48Updated last month
• Gabaldonlab / jloh
  A tool to extract LOH blocks from VCF, BAM and FASTA data
  ☆21Updated 7 months ago
• human-pangenomics / hprc-tutorials
  ☆17Updated last year
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆39Updated last month
• epi2me-labs / wf-alignment
  ☆27Updated 2 months ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆49Updated 7 months ago
• MariaNattestad / dot
  Dot: An interactive dot plot viewer for comparative genomics
  ☆33Updated last year
• enormandeau / snplift
  Transfer coordinates across genomes
  ☆23Updated last week
• cfarkas / annotate_my_genomes
  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
  ☆29Updated last year
• PacificBiosciences / bam2fastx
  Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.
  ☆37Updated 2 years ago
• 1kg-ont-vienna / sv-analysis
  SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
  ☆25Updated last month
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago