Tools and utilities for making use of mastiff
☆12Mar 10, 2023Updated 3 years ago
Alternatives and similar repositories for 2022-search-sra-with-mastiff
Users that are interested in 2022-search-sra-with-mastiff are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Jan 21, 2024Updated 2 years ago
- From metagenomes to epitopes and beyond☆12Apr 15, 2026Updated 2 weeks ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 7 months ago
- notes on the farm cluster☆16Feb 26, 2025Updated last year
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Apr 1, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test☆15Mar 7, 2019Updated 7 years ago
- Course material for the Madrid ASDM class on text mining (C09)☆12Jul 5, 2019Updated 6 years ago
- EnDED is a program that aims to detect environmentally-driven ("indirect") edges in an association network.☆10Dec 1, 2023Updated 2 years ago
- Repository with materials for the Speeding Up Science Workshops at UC Davis☆10Oct 31, 2019Updated 6 years ago
- Working with the outputs of sourmash in R☆28Jan 15, 2026Updated 3 months ago
- Distance denoise by Entropy☆15Oct 17, 2025Updated 6 months ago
- DACE: A Scalable DP-means Algorithm for Clustering Extremely Large Sequence Data☆10May 22, 2016Updated 9 years ago
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Mar 1, 2026Updated last month
- ☆18Nov 16, 2015Updated 10 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tools for analyzing trees☆13Apr 16, 2025Updated last year
- ☆14Oct 14, 2020Updated 5 years ago
- nf-test utility functions☆12Mar 5, 2026Updated last month
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆28Apr 28, 2025Updated last year
- Search text files for DNA sequences and their reverse complements☆13Mar 2, 2017Updated 9 years ago
- Mycobacterium tuberculosis complex lineage typing☆10Jun 22, 2025Updated 10 months ago
- Pipeline to generate NGS reads from a phylogeny☆39Sep 13, 2022Updated 3 years ago
- A Python library for generating random phylogenetic trees and related data☆13Jul 4, 2022Updated 3 years ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Jan 22, 2020Updated 6 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆35Nov 22, 2022Updated 3 years ago
- The AMRgen package provides tools for interpreting antimicrobial resistance (AMR) genes, integrating genomic data with phenotypic antimic…☆15Updated this week
- An R Markdown template using the bookdown package for preparing a PhD thesis at the University of California Davis☆16Dec 6, 2023Updated 2 years ago
- annotating microbial co-occurrence networks☆12Oct 7, 2025Updated 6 months ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆542Updated this week
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆89Oct 27, 2023Updated 2 years ago
- RNA dependent RNA Polymerase Palmprint Analysis☆12Aug 1, 2024Updated last year
- MineYourSymbiont : Targetted genome assembly for metagenomics pipeline.☆10Mar 3, 2023Updated 3 years ago
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data.☆12Sep 7, 2022Updated 3 years ago
- Phylogenetic Network Inference without ILS☆19Jul 31, 2022Updated 3 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆30Jun 13, 2023Updated 2 years ago
- Mycobacterial pipeline☆11Sep 11, 2025Updated 7 months ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Apr 16, 2024Updated 2 years ago
- all methods related to Enterobase☆44Sep 4, 2024Updated last year