This repository contains the tensorflow implementation of "GNE: A deep learning framework for gene network inference by aggregating biological information"
☆32Dec 10, 2020Updated 5 years ago
Alternatives and similar repositories for GNE
Users that are interested in GNE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆22Nov 11, 2019Updated 6 years ago
- MODIG: Integrating Multi-Omics and Multi-Dimensional Gene Network for Cancer Driver Gene Identification based on Graph Attention Network …☆12Dec 27, 2022Updated 3 years ago
- An application to compare genetic maps with D3 & Shiny☆22Feb 28, 2023Updated 3 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Jul 19, 2022Updated 3 years ago
- Parameter-efficient embeddings for proteins, pretrained using a contrastive loss.☆30Jul 20, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Dec 10, 2024Updated last year
- An implementation of the Multilayer Perceptron for breast cancer detection using the Wisconsin diagnostic dataset.☆10Feb 1, 2024Updated 2 years ago
- using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data☆21Nov 16, 2018Updated 7 years ago
- Reimplementation of paper "Variational Graph Auto-Encoders", adapted from https://github.com/limaosen0/Variational-Graph-Auto-Encoders/, …☆13Apr 28, 2020Updated 6 years ago
- Towards Gene Expression Convolutions using Gene Interaction Graphs☆76Jan 7, 2022Updated 4 years ago
- ☆12Feb 12, 2024Updated 2 years ago
- Source files for the SmartRoot software. Website: https://smartroot.github.io/☆16Jun 28, 2022Updated 3 years ago
- DiffNetFDR☆10Sep 12, 2018Updated 7 years ago
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter☆14Jan 18, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆50Sep 4, 2025Updated 8 months ago
- ☆11Feb 14, 2019Updated 7 years ago
- Gene Regulatory Graph Neural Networks☆36Jun 21, 2022Updated 3 years ago
- SmuDGE: Semantic Disease Gene Embeddings☆12Jul 11, 2018Updated 7 years ago
- A suite of Dash components for JBrowse's embeddable components☆14Jan 3, 2024Updated 2 years ago
- A Python package for gene network analysis☆32Jun 22, 2022Updated 3 years ago
- this is the source code and data☆19Jan 25, 2019Updated 7 years ago
- ☆11Feb 15, 2023Updated 3 years ago
- DES 加密算法的 Python3 实现☆16May 28, 2018Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code for paper, A Multimodal Graph Neural Network Framework for Cancer Molecular Subtype Classification☆17Apr 14, 2025Updated last year
- Python and UNIX CLI utilities to simplify interaction with the NIH/NCI Genomics Data Commons☆31Oct 11, 2018Updated 7 years ago
- A Python toolkit for setting up benchmarking dataset using biomedical networks☆21Apr 27, 2026Updated last week
- ☆11Oct 10, 2018Updated 7 years ago
- VIMbix is a VMware Virtual Infrastructure Methodology RESTfull proxy for Zabbix☆26Aug 11, 2016Updated 9 years ago
- Landscape Single Cell Entropy☆23Aug 24, 2020Updated 5 years ago
- Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering☆12May 4, 2019Updated 7 years ago
- Heterogeneous relational message passing networks (HermNet)☆14Oct 10, 2022Updated 3 years ago
- bioscrape (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆16Jan 9, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆18Nov 13, 2024Updated last year
- Repository of standardized biological experimental data and metadata☆15Jan 9, 2025Updated last year
- Call regions of homozygosity and make tentative UPD calls☆12Jun 27, 2025Updated 10 months ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 2 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Apr 23, 2026Updated last week
- functions and algorithms for single cell RNA-seq analyses☆11Jan 26, 2021Updated 5 years ago
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆12May 16, 2023Updated 2 years ago