This repository contains the tensorflow implementation of "GNE: A deep learning framework for gene network inference by aggregating biological information"
☆32Dec 10, 2020Updated 5 years ago
Alternatives and similar repositories for GNE
Users that are interested in GNE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MODIG: Integrating Multi-Omics and Multi-Dimensional Gene Network for Cancer Driver Gene Identification based on Graph Attention Network …☆12Dec 27, 2022Updated 3 years ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20May 25, 2026Updated last month
- This is a read-only mirror of the CRAN R package repository. SNFtool — Similarity Network Fusion☆23Jun 11, 2021Updated 5 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Dec 10, 2024Updated last year
- Parameter-efficient embeddings for proteins, pretrained using a contrastive loss.☆30Jul 20, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An implementation of the Multilayer Perceptron for breast cancer detection using the Wisconsin diagnostic dataset.☆11Feb 1, 2024Updated 2 years ago
- DiffNetFDR☆10Sep 12, 2018Updated 7 years ago
- Source files for the SmartRoot software. Website: https://smartroot.github.io/☆16Jun 28, 2022Updated 4 years ago
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter☆14Jan 18, 2019Updated 7 years ago
- ☆13Jun 25, 2021Updated 5 years ago
- ☆52Sep 4, 2025Updated 10 months ago
- Gene Regulatory Graph Neural Networks☆37Jun 21, 2022Updated 4 years ago
- A suite of Dash components for JBrowse's embeddable components☆14Jan 3, 2024Updated 2 years ago
- A Python package for gene network analysis☆33Jun 22, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Analysis tools for SLEAP-based plant root phenotyping.☆13Jun 25, 2026Updated last week
- A simple python library to identify the most likely strain from the population☆10Jan 11, 2024Updated 2 years ago
- Machine Learning to Detect Cancer Biomarkers from RNAseq Data☆36Aug 9, 2019Updated 6 years ago
- Python and UNIX CLI utilities to simplify interaction with the NIH/NCI Genomics Data Commons☆31Oct 11, 2018Updated 7 years ago
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- A Python toolkit for setting up benchmarking dataset using biomedical networks☆21May 25, 2026Updated last month
- ☆11Oct 10, 2018Updated 7 years ago
- VIMbix is a VMware Virtual Infrastructure Methodology RESTfull proxy for Zabbix☆26Aug 11, 2016Updated 9 years ago
- Landscape Single Cell Entropy☆23Aug 24, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering☆12May 4, 2019Updated 7 years ago
- ☆15Nov 16, 2023Updated 2 years ago
- bioscrape (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆16Jan 9, 2021Updated 5 years ago
- Korean Morphological Analyzer using Hidden Markov Model (HMM)☆10Nov 4, 2018Updated 7 years ago
- Call regions of homozygosity and make tentative UPD calls☆12Jun 27, 2025Updated last year
- Repository for the T2D/obesity experiments run in the Metapheno paper☆15Feb 6, 2019Updated 7 years ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 2 years ago
- MOGONET (Multi-Omics Graph cOnvolutional NETworks) is multi-omics data integrative analysis framework for classification tasks in biomedi…☆17Mar 27, 2025Updated last year
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆26May 16, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆12May 16, 2023Updated 3 years ago
- Example of deploying an MVC application with app settings using the Azure Deploy Button☆13Apr 9, 2024Updated 2 years ago
- Subclassification of disease states based on the intersection of literature and expression☆13Jan 15, 2019Updated 7 years ago
- Single cell network synthesis toolkit☆23Feb 15, 2021Updated 5 years ago
- Python 2.7 package with examples for evaluating a network's ability to group a given node set in network proximity.☆34Mar 24, 2023Updated 3 years ago
- Aggregation and analyses of rare CNVs across diseases☆15Jan 25, 2023Updated 3 years ago
- Bayesian Logistic Regression with Hyper-LASSO priors☆10Dec 14, 2025Updated 6 months ago