opentargets-archive / data_pipelineLinks
Code for the data processing pipeline
☆17Updated 4 years ago
Alternatives and similar repositories for data_pipeline
Users that are interested in data_pipeline are comparing it to the libraries listed below
Sorting:
- In Silico Prediction of Novel Therapeutic Targets Using Gene – Disease Association Data☆18Updated 7 years ago
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing☆33Updated 8 years ago
- NExt generation Analysis Toolbox☆14Updated 10 years ago
- DrugBank dataset files in R dataframes☆16Updated 11 months ago
- ☆28Updated 7 years ago
- SODAR: System for Omics Data Access and Retrieval☆18Updated last week
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Updated 7 years ago
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆27Updated last year
- Class materials for the NIH HPC snakemake class☆15Updated last year
- ☆15Updated 2 years ago
- iDEP: integrated Differential Expression & Pathway analysis☆14Updated 6 years ago
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Updated 4 years ago
- Text mining cancer biomarkers for the CIVIC database☆22Updated last week
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Updated 7 years ago
- A browser extension and web application for extracting gene sets from GEO and piping them to Enrichr.☆14Updated 2 years ago
- API for linked biological knowledge☆66Updated 3 years ago
- ☆11Updated 3 years ago
- a Graph database and R package for omic data integration☆20Updated 9 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated 2 years ago
- Project code for BioHackathon Europe 2023.☆18Updated last year
- ☆26Updated 4 years ago
- Dynamic visualization of Electronic Health Record data in the OMOP framework☆29Updated 4 years ago
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11Updated 5 years ago
- ☆11Updated 5 years ago
- A web application from the Raphael Lab for mutation annotation and genome interpretation.☆20Updated 7 years ago
- BioThings API framework - Making high-performance API for biological annotation data☆48Updated last week
- R package with netDx software and data for examples☆12Updated 2 years ago
- Reproducible Workflows, curated at the Fred Hutch☆12Updated 6 years ago
- Bioinformatics course (WSBIM1322)☆17Updated last month
- Framework for running bioinformatic workflows and pipelines using the Google Pipelines API as the underlying task-runner.☆12Updated 8 years ago