fairliereese / LR-splitpipeLinks
Demultiplexing and debarcoding tool designed for LR-Split-seq data.
☆23Updated 2 years ago
Alternatives and similar repositories for LR-splitpipe
Users that are interested in LR-splitpipe are comparing it to the libraries listed below
Sorting:
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- ☆33Updated last year
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆32Updated last week
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22Updated last year
- Tutorial Website☆60Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 2 months ago
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆17Updated last month
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Updated 5 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆58Updated last month
- ☆52Updated last year
- SNV calling from single cell sequencing☆118Updated last year
- Full-length transcriptome splicing and mutation analysis☆85Updated last year
- Single Cell Analysis of Five'Ends☆50Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- A comprehensive toolkit for single-cell methylation sequencing data analysis☆28Updated 2 weeks ago
- Statistically Significant loops from HiChIP data☆46Updated last year
- Estimate locus specific human LINE-1 expression.☆39Updated last month
- ATAC-seq processing pipeline☆34Updated 3 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 4 years ago
- RNA editing tests☆17Updated 5 years ago
- ☆15Updated 4 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆20Updated this week
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆43Updated 2 years ago
- ☆18Updated last year
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆24Updated 4 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- ☆32Updated 10 months ago