Demultiplexing and debarcoding tool designed for LR-Split-seq data.
☆25Oct 19, 2023Updated 3 years ago
Alternatives and similar repositories for LR-splitpipe
Users that are interested in LR-splitpipe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python library to visualize and analyze long-read transcriptomes☆69Jan 19, 2026Updated 9 months ago
- ☆11Sep 20, 2022Updated 4 years ago
- R package to process BUS files☆11Mar 18, 2026Updated 7 months ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆51May 26, 2026Updated 5 months ago
- Winter 2021, GGG 298 - Tools for Data Intensive Research - UC Davis☆12Mar 10, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆16Apr 8, 2026Updated 6 months ago
- ☆23Apr 17, 2020Updated 6 years ago
- R package to detect splicing QTLs (sQTLs)☆13Jul 3, 2023Updated 3 years ago
- ☆17Jul 12, 2024Updated 2 years ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- Custom code for processing Parse Bio snRNA-seq data generated by the Mortazavi lab at UCI☆22Oct 5, 2025Updated last year
- Pseudotime analysis for time-series single-cell sequencing and imaging data☆14Mar 13, 2026Updated 7 months ago
- Technology agnostic long read analysis pipeline for transcriptomes☆162Jan 25, 2024Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆16Apr 4, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆39Apr 25, 2023Updated 3 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆40Nov 8, 2023Updated 2 years ago
- ☆21Apr 20, 2026Updated 6 months ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆73Jan 31, 2024Updated 2 years ago
- Pipeline for RNA and DNA integrated analysis for somatic mutation detection☆13Updated this week
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆30Aug 20, 2024Updated 2 years ago
- ☆17Jul 19, 2024Updated 2 years ago
- LongSom tool for long-reads☆13May 20, 2025Updated last year
- DOLPHIN: Advances Single-cell RNA-seq Analysis Beyond Gene-Level by Integrating Exon-Level Quantification and Junction Reads with Deep Ne…☆17Sep 7, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆46Dec 8, 2025Updated 10 months ago
- Gencode UTR fix☆17Jan 11, 2023Updated 3 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Apr 10, 2023Updated 3 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- Iso-Seq reads simulator for PacBio and ONT full-length isoform sequencing technologies☆16Mar 1, 2022Updated 4 years ago
- Nanopore 3' end-capture sequencing (Begik et al., Nat Methods 2022)☆16Aug 18, 2026Updated 2 months ago
- Pan-transcriptomic phenotyping☆23Oct 22, 2026Updated last week
- A python library for decomposing and visualizing tandem repeat sequences☆11May 26, 2026Updated 5 months ago
- Course of Machine Learning for Biomedical Data -TECNUN University of Navarra☆12Apr 21, 2026Updated 6 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Cytometry by time-of-flight(CyTOF) data is very useful in studying the presence/absence of antigens/surface markers at single cell level.…☆15Jun 1, 2020Updated 6 years ago
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆45Mar 9, 2023Updated 3 years ago
- Collection of analysis tools for quantitative trait loci☆66Sep 20, 2026Updated last month
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆16Sep 4, 2026Updated last month
- IsoVis enables fast and informative visualization of isoform structures and expression levels.☆17Oct 21, 2026Updated last week
- FulQuant pipeline to identify and quantify transcript isoforms based on Nanopore long-read data☆10Jul 20, 2022Updated 4 years ago
- DTU analysis tool inspired by llamas☆12Aug 19, 2026Updated 2 months ago