fairliereese / LR-splitpipeLinks
Demultiplexing and debarcoding tool designed for LR-Split-seq data.
☆23Updated 2 years ago
Alternatives and similar repositories for LR-splitpipe
Users that are interested in LR-splitpipe are comparing it to the libraries listed below
Sorting:
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 4 years ago
- Estimate locus specific human LINE-1 expression.☆39Updated last month
- A modular, containerized pipeline for ATAC-seq data processing☆59Updated 3 weeks ago
- SNV calling from single cell sequencing☆111Updated 11 months ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆43Updated 2 years ago
- Tutorial Website☆61Updated 4 years ago
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆16Updated this week
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆25Updated last year
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆53Updated last year
- RNA editing tests☆17Updated 5 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆20Updated this week
- SingleCell Nanopore sequencing data analysis☆61Updated 4 months ago
- ☆32Updated last year
- ☆51Updated last year
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆31Updated 6 months ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆52Updated 4 months ago
- Detection of differential translated genes using Ribo-seq☆16Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago
- A list of alternative splicing analysis resources☆46Updated 6 months ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆70Updated 11 months ago
- An R package to time somatic mutations☆64Updated 4 years ago
- Tools which deal with multiple single cell measurements☆24Updated 2 months ago
- mgatk: mitochondrial genome analysis toolkit☆108Updated 9 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆20Updated last year