fairliereese / LR-splitpipeLinks
Demultiplexing and debarcoding tool designed for LR-Split-seq data.
☆23Updated last year
Alternatives and similar repositories for LR-splitpipe
Users that are interested in LR-splitpipe are comparing it to the libraries listed below
Sorting:
- A modular, containerized pipeline for ATAC-seq data processing☆59Updated 4 months ago
- SNV calling from single cell sequencing☆107Updated 10 months ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 8 months ago
- Tutorial Website☆59Updated 4 years ago
- Estimate locus specific human LINE-1 expression.☆39Updated 2 weeks ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 3 years ago
- ☆32Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆31Updated 2 years ago
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆43Updated 2 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 6 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆31Updated 5 months ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated 2 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆69Updated 10 months ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆37Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- An R package to time somatic mutations☆63Updated 4 years ago
- Links to ATAC-seq analysis tools☆70Updated 4 years ago
- ☆51Updated last year
- Single Cell Analysis of Five'Ends☆50Updated last year
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆52Updated last year
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆80Updated 3 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆25Updated last year
- RNA editing tests☆17Updated 5 years ago
- A comprehensive toolkit for single-cell methylation sequencing data analysis☆24Updated last month
- Enhanced version of the FastQTL QTL mapper☆68Updated 2 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- mgatk: mitochondrial genome analysis toolkit☆108Updated 8 months ago