tommyhuangthu / SSIPe
an accurate approach for predicting protein-protein affinity changes upon interfacial amino-acid mutations by combining physics and evolution
☆13Updated 2 years ago
Alternatives and similar repositories for SSIPe:
Users that are interested in SSIPe are comparing it to the libraries listed below
- Protein common interface databases☆9Updated 6 years ago
- ☆22Updated last year
- ☆15Updated 2 years ago
- ☆24Updated last year
- ☆28Updated last year
- Protein-protein binding affinity benchmark☆13Updated 2 months ago
- Fragment binding prediction with ColabFold☆33Updated last month
- ☆11Updated 4 years ago
- ☆25Updated last year
- Structural space exploration of AlphaFold DB☆12Updated 3 years ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆16Updated 4 months ago
- Model-based Analysis of Protein Degradability☆10Updated 3 years ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 5 years ago
- Evolutionary conservation estimation of residues or nucleotides☆41Updated 3 years ago
- Peptide library design☆23Updated 4 years ago
- Geometry-aware protein binding site predictor☆21Updated 8 months ago
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆16Updated 2 years ago
- ☆13Updated 7 years ago
- Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix☆35Updated 2 years ago
- ☆9Updated last year
- Machine learning-driven antibody design☆55Updated last year
- ☆11Updated last year
- Clustering tool for biomolecular structural ensembles and data in general.☆10Updated 4 years ago
- Use machine learning to design codon-optimized DNA sequences for increased protein expression.☆15Updated 2 years ago
- a collection of colabs useful for molecular biology☆30Updated last year
- KDS software for Kinase Drug Selectivity☆11Updated last year
- ☆13Updated 4 months ago
- Tools for annotation, processing and ML for antibody sequences☆27Updated this week
- Foldy: a web-based platform for interactive protein structure analysis☆23Updated last month
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year