A context-based long-read simulator
☆15Oct 12, 2026Updated last week
Alternatives and similar repositories for CycSim
Users that are interested in CycSim are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A GUI tools for Gap closed based on assembly graph☆14Nov 4, 2025Updated 11 months ago
- genotype and visualize structural variants in the human pangenome graphs☆16Nov 21, 2025Updated 11 months ago
- A filter algorithm with program to filter an alignment or mapping file☆13May 15, 2025Updated last year
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- [DEPRECATED] Bamboo: a tool for quality control and error profiling of long-read sequencing data.☆15Mar 26, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Classify chimeric reads based on unique kmer contents☆14Aug 30, 2026Updated last month
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 8 months ago
- A newly designed version of Bamsnap with Long Read Support (LRS) which inspired by bamsnap (https://github.com/parklab/bamsnap)☆14Oct 13, 2026Updated last week
- Robust Eukaryotic Annotation Toolkit☆18Feb 28, 2025Updated last year
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆46Aug 12, 2026Updated 2 months ago
- ☆42May 19, 2025Updated last year
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- ☆29May 12, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fully automatic k-mer based polishing for genome assemblies. Based on original concept and design from Ivan Sovic, Ann McCartney, and Ara…☆11Mar 16, 2026Updated 7 months ago
- ☆18Jan 29, 2025Updated last year
- ☆13Nov 15, 2017Updated 8 years ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- Pangenome diversity from k-mers or genes☆13Sep 22, 2026Updated last month
- ☆14Sep 21, 2026Updated last month
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆39Feb 20, 2026Updated 8 months ago
- TR annotation tool VAMPIRE☆19Sep 2, 2026Updated last month
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Workflow to visualize pggb graphs in jbrowse☆11Mar 15, 2024Updated 2 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆39Oct 16, 2026Updated last week
- Allele-specific modeling of diploid Hi-C data☆12May 6, 2021Updated 5 years ago
- repository for materials to do with the VGP phase 1 data freeze, analyses, and publication☆11Dec 23, 2025Updated 10 months ago
- ☆32Jun 18, 2026Updated 4 months ago
- The tool is employed for the visualisation of genome-wide contact heatmaps.☆14Apr 14, 2025Updated last year
- base-level dotplots from PAF alignments☆36Oct 16, 2026Updated last week
- A multiscale pangenome browser☆36Jul 18, 2026Updated 3 months ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Aug 4, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆27Oct 9, 2026Updated 2 weeks ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Jan 25, 2024Updated 2 years ago
- ☆14Nov 29, 2022Updated 3 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆28May 18, 2024Updated 2 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 5 years ago
- ☆13Dec 10, 2025Updated 10 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆25Apr 25, 2024Updated 2 years ago