Post-verkko graph and assembly curation in Python.
☆37Oct 1, 2026Updated last week
Alternatives and similar repositories for verkko-fillet
Users that are interested in verkko-fillet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genome Assembly 102☆19Apr 23, 2025Updated last year
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- Multiple sequence alignment of long tandem repeats☆34Updated this week
- The complete sequence of a Chinese individual☆14Oct 8, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆45Dec 29, 2025Updated 9 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- Transformer-based sequence correction method for genome assembly polishing☆111Mar 11, 2025Updated last year
- Misassembly Identifier☆28Sep 5, 2026Updated last month
- GFA visualization tool - Rust reimplementation of odgi viz☆15May 2, 2026Updated 5 months ago
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- ☆43Oct 6, 2025Updated last year
- TR annotation tool VAMPIRE☆18Sep 2, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆31Aug 18, 2026Updated last month
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆40Dec 30, 2025Updated 9 months ago
- ☆16Apr 9, 2021Updated 5 years ago
- base-level dotplots from PAF alignments☆36Sep 18, 2025Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆27Aug 20, 2020Updated 6 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆63Jul 5, 2026Updated 3 months ago
- blastn2dotplots: multiple dot-plot visualizer☆29Sep 15, 2025Updated last year
- ☆30Oct 1, 2026Updated last week
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Aug 4, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Scoring GT/AG sites for improving spliced alignment☆59Nov 10, 2025Updated 10 months ago
- A tool for sniffing out the differences in vari-Ants☆58Sep 29, 2026Updated last week
- ☆29May 12, 2026Updated 4 months ago
- plane sweep filtering genome alignments☆24Sep 28, 2026Updated last week
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆67May 17, 2026Updated 4 months ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- Enumerating bubbles in pangenome graphs☆16Updated this week
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- implicit pangenome graph☆114Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pooled Sequencing Analysis for Sex Signal☆15Sep 14, 2021Updated 5 years ago
- ☆18Jan 29, 2025Updated last year
- ☆33Jul 13, 2026Updated 2 months ago
- COsine SImilarity-based Genotyper using pangenomes☆40Sep 24, 2026Updated 2 weeks ago
- A multiscale pangenome browser☆36Jul 18, 2026Updated 2 months ago
- A tool for evaluate long-read de novo assembly results☆52Aug 28, 2024Updated 2 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago