Post-verkko graph and assembly curation in Python.
☆37Oct 24, 2026Updated this week
Alternatives and similar repositories for verkko-fillet
Users that are interested in verkko-fillet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fully automatic k-mer based polishing for genome assemblies. Based on original concept and design from Ivan Sovic, Ann McCartney, and Ara…☆11Mar 16, 2026Updated 7 months ago
- ☆31Aug 18, 2026Updated 2 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- genotype and visualize structural variants in the human pangenome graphs☆16Nov 21, 2025Updated 11 months ago
- ☆29May 12, 2026Updated 5 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Genome Assembly 102☆19Apr 23, 2025Updated last year
- A program for assessing the T2T genome continuity and completeness☆98Oct 13, 2026Updated 2 weeks ago
- ☆43Oct 6, 2025Updated last year
- rust tool to choose the best read alignment between haploids to a diploid reference genome☆21Oct 20, 2026Updated last week
- A newly designed version of Bamsnap with Long Read Support (LRS) which inspired by bamsnap (https://github.com/parklab/bamsnap)☆14Oct 13, 2026Updated 2 weeks ago
- Misassembly Identifier☆29Sep 5, 2026Updated last month
- Tools for Gene Expression Quantification in Polyploid Species☆13Sep 29, 2025Updated last year
- Dynamic Elongation of a Genome Assembly Path☆32Updated this week
- The complete sequence of a Chinese individual☆14Oct 8, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Evaluating genome assemblies☆128Oct 21, 2026Updated last week
- Workflow to visualize pggb graphs in jbrowse☆11Mar 15, 2024Updated 2 years ago
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Extracting paths from assembly graphs☆26Jun 22, 2026Updated 4 months ago
- KaryoScope: rapid, alignment-free sequence annotation for the pangenome era☆29Oct 21, 2026Updated last week
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- TR annotation tool VAMPIRE☆19Sep 2, 2026Updated last month
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Consensus genome annotation using OMA☆32Jan 14, 2026Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Transformer-based sequence correction method for genome assembly polishing☆111Mar 11, 2025Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆25Apr 25, 2024Updated 2 years ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆40Dec 30, 2025Updated 9 months ago
- Figures for the CHM13 T2T SD paper.☆12Sep 12, 2021Updated 5 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆140Sep 8, 2026Updated last month
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- repository for materials to do with the VGP phase 1 data freeze, analyses, and publication☆11Dec 23, 2025Updated 10 months ago
- Mosaic Genome Assembler☆28Sep 14, 2026Updated last month
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆422Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Pangenome-based genome inference☆184Updated this week
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆132Updated this week
- ☆45Dec 29, 2025Updated 10 months ago
- PHasing Reads in Areas Of Homozygosity☆14Feb 12, 2025Updated last year
- ☆33Oct 21, 2026Updated last week
- somatic SV calling on matched tumor-normal co-assembly graphs☆24Aug 1, 2024Updated 2 years ago
- A pipeline for extracting Presence-Absence Variations (PAVs) in eukaryotic and prokaryotic genomes across multiple assemblies.☆11May 21, 2026Updated 5 months ago