longhaiSK / HTLR
Bayesian Logistic Regression with Hyper-LASSO priors
☆10Updated 2 months ago
Alternatives and similar repositories for HTLR:
Users that are interested in HTLR are comparing it to the libraries listed below
- Core utilities for single-cell RNA-seq☆12Updated last month
- ☆11Updated 2 years ago
- cEll tyPe enrIChment☆14Updated 2 years ago
- Gene-level general linear mixed model☆19Updated 2 weeks ago
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11Updated 4 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- R/Shiny package for network-integrated pathway enrichment analysis☆14Updated 4 years ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated 2 months ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Updated 4 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Updated 4 years ago
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆12Updated last year
- Supplement to the report in https://greenelab.github.io/czi-hca-report/☆9Updated 6 years ago
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆11Updated 9 months ago
- Volume-regularized NMF☆17Updated 2 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- A Grammar of Data Manipulation for Omics Data☆21Updated 4 years ago
- Hierarchical Random Forest for Information Transfer☆12Updated 3 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆25Updated last year
- R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)☆24Updated 2 years ago
- 🐶 hlabud: HLA genotype analysis in R☆16Updated 7 months ago
- Tutorial for the analysis of scRNA-seq data in R☆18Updated 6 years ago
- TFregulomeR reveals transcription factors’ context-specific features and functions☆16Updated 2 years ago
- [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages☆25Updated last year
- Visualising single-cell trajectories, including comparisons between two models 📈☆30Updated 3 years ago
- Dimensionality reduction and batch integration methods for single cell data☆16Updated last year
- Automatic selection of number of principal components☆14Updated 2 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 4 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated last month
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆17Updated 3 years ago
- Interactive benchmarking of ranking and assignment methods☆14Updated last month