Alternatives and similar repositories for mito-genotyping:

Users that are interested in mito-genotyping are comparing it to the libraries listed below

• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆42Updated last year
• pachterlab / NYMP_2018
  ☆28Updated 5 years ago
• natsuhiko / rasqual
  Robust Allele Specific Quantification and quality controL
  ☆38Updated 3 years ago
• jon-xu / scSplit
  Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…
  ☆41Updated last year
• statgen / popscle
  A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…
  ☆43Updated 3 years ago
• kundajelab / ataqc
  ☆17Updated 6 years ago
• caleblareau / mitoblacklist
  Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome
  ☆18Updated 2 years ago
• YosefLab / ImpulseDE2
  ☆36Updated 2 years ago
• dbrg77 / plate_scATAC-seq
  A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method
  ☆43Updated 3 years ago
• andygxzeng / BoneMarrowMap
  A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …
  ☆29Updated 2 months ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆38Updated 2 years ago
• caleblareau / bap
  Bead-based single-cell atac processing
  ☆31Updated 3 years ago
• yjzhang / split-seq-pipeline
  ☆20Updated 4 years ago
• jessemzhang / tn_test
  post-clustering differential expression test
  ☆35Updated 5 years ago
• nghiavtr / SCmut
  ☆31Updated 5 years ago
• single-cell-genetics / cardelino
  Clone identification from single-cell data
  ☆60Updated 2 years ago
• databio / pepatac
  A modular, containerized pipeline for ATAC-seq data processing
  ☆54Updated this week
• UPSUTER / GEMLI
  ☆29Updated 4 months ago
• raphael-group / chisel
  CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links
  ☆37Updated 2 months ago
• bvieth / scRNA-seq-pipelines
  Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
  ☆53Updated 3 years ago
• GreenleafLab / NucleoATACR
  R package for reading in & working with NucleoATAC outputs
  ☆26Updated 6 years ago
• humengying0907 / InstaPrism
  InstaPrism is an R package for fast implementation of BayesPrism
  ☆36Updated 7 months ago
• gqi / DAESC
  ☆10Updated 6 months ago
• r3fang / snATAC
  <<------ Use SnapATAC!!
  ☆25Updated 5 years ago
• cozygene / TCA
  ☆17Updated 3 years ago
• vivekbhr / Subread_to_DEXSeq
  Scripts to import your FeatureCounts output into DEXSeq
  ☆32Updated 6 years ago
• caleblareau / BuenColors
  R package of colors for the Buenrostro Lab
  ☆80Updated 4 months ago
• huangyh09 / brie
  BRIE: Bayesian Regression for Isoform Estimate in Single Cells
  ☆41Updated 7 months ago
• fmicompbio / monaLisa
  binned motif enrichment analysis and visualisation
  ☆39Updated this week
• powellgenomicslab / onek1k_phase1
  Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types
  ☆24Updated 3 years ago