sankaranlab / mito-genotyping
Repo for scripts for Ludwig et al mtDNA genotyping
☆16Updated 5 years ago
Alternatives and similar repositories for mito-genotyping:
Users that are interested in mito-genotyping are comparing it to the libraries listed below
- ☆28Updated 6 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- Robust Allele Specific Quantification and quality controL☆39Updated 3 years ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆38Updated 5 months ago
- ☆16Updated 6 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 5 months ago
- post-clustering differential expression test☆35Updated 5 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- Single-cell copy number calling and event history reconstruction.☆23Updated 4 months ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Reconstruction of spatial context of gene expression with optimal transport☆11Updated 6 years ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆19Updated 2 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- supporting code for the multinomial single cell RNA-Seq paper☆51Updated 4 years ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆11Updated 3 weeks ago
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆28Updated 3 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆48Updated 3 years ago
- ☆17Updated 10 months ago
- Single Cell Analysis of Five'Ends☆49Updated last year
- ☆38Updated 2 years ago
- Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)☆17Updated 7 years ago
- A method for analyzing scATAC-seq experiments.☆30Updated last month
- ☆49Updated 8 months ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- A clusterability measure for scRNA-seq data.☆18Updated 3 years ago
- Diagnostic functions to assess the quality of cell type annotations in single-cell RNA-seq data☆9Updated last month