Metagenomic classifier for CUDA-enabled GPUs
☆17Jun 12, 2018Updated 7 years ago
Alternatives and similar repositories for cuclark
Users that are interested in cuclark are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- gossip: Efficient Communication Primitives for Multi-GPU Systems☆62Jul 1, 2022Updated 3 years ago
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 9 months ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 3 years ago
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Dec 16, 2016Updated 9 years ago
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Jun 1, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A minimap2 implementation with binseq inputs☆17Dec 11, 2025Updated 4 months ago
- Deep Learning Library for R☆12May 6, 2018Updated 7 years ago
- ☆22Apr 3, 2023Updated 3 years ago
- Generating UTRs from SHort Reads☆11Sep 28, 2020Updated 5 years ago
- generic C++ containers; matrix, triangle matrix, crs sparse matrix, etc.☆12Mar 23, 2018Updated 8 years ago
- LAVA (LAMP Assay Versatile Analysis) is an extendable open-source Loop-mediated isothermal AMPlification (LAMP)☆20Aug 24, 2023Updated 2 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Nov 18, 2018Updated 7 years ago
- ☆16Apr 9, 2021Updated 5 years ago
- The Power of LaTeX, the Style of Markdown.☆12Sep 5, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated 10 months ago
- ☆21Feb 15, 2025Updated last year
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- ☆14Apr 26, 2022Updated 4 years ago
- Code for DNA plasmid editing.☆44Aug 17, 2018Updated 7 years ago
- A comprehensive pipeline for short read metagenomic data☆25Aug 25, 2020Updated 5 years ago
- R package for downstream analysis for anacapa eDNA pipeline☆23Dec 10, 2021Updated 4 years ago
- CARE: Context-Aware Read Error correction for Illumina reads☆21Nov 1, 2023Updated 2 years ago
- Punctuation text objects: ci/ da; vi@ yiq da<space> ...☆37Oct 18, 2013Updated 12 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Calculate assocations between genes and traits☆31Mar 10, 2025Updated last year
- fragbuilder is a tool to create, setup and analyze QM calculations on peptides.☆15Oct 31, 2014Updated 11 years ago
- ☆64Feb 27, 2024Updated 2 years ago
- KEGG Module Evaluation Tool☆33Mar 5, 2026Updated last month
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15May 1, 2025Updated 11 months ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆24Updated this week
- ORF prediction using python☆12Aug 24, 2021Updated 4 years ago
- ☆16Jan 12, 2026Updated 3 months ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- profile the repeat landscape in a genome☆16Sep 9, 2014Updated 11 years ago
- GenomeThreader gene prediction software.☆14Nov 10, 2025Updated 5 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆40Sep 17, 2025Updated 7 months ago
- A sequence-based pan model for peptide-MHC II binding affinity prediction.☆21May 16, 2022Updated 3 years ago
- ☆75Mar 10, 2024Updated 2 years ago
- Multiplex Primer Design☆21Oct 30, 2020Updated 5 years ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Mar 29, 2025Updated last year