Alternatives and similar repositories for rich-msa

Users that are interested in rich-msa are comparing it to the libraries listed below

• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆143Updated last week
• KatyBrown / CIAlign
  ☆131Updated 11 months ago
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆37Updated 2 months ago
• soedinglab / plass
  sensitive and precise assembly of short sequencing reads
  ☆157Updated 9 months ago
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆147Updated this week
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆113Updated 9 months ago
• glarue / jgi-query
  A simple command-line tool to download data from Joint Genome Institute databases
  ☆52Updated 2 years ago
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆35Updated last month
• steineggerlab / unicore
  Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5
  ☆70Updated last month
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆73Updated 3 years ago
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆83Updated 8 months ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆139Updated 8 months ago
• Russel88 / CRISPRCasTyper
  CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
  ☆102Updated last year
• EnzoAndree / HmmPy
  A Pure-Python parser of HMMER3 output
  ☆17Updated 9 months ago
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆83Updated 2 months ago
• jrjhealey / bioinfo-tools
  Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
  ☆59Updated 4 years ago
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated 2 years ago
• arvestad / alv
  A console-based alignment viewer
  ☆114Updated last month
• mckennalab / Circuitseq
  Nanopore Plasmid Sequencing
  ☆33Updated last year
• cultivarium / GenomeSPOT
  Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
  ☆56Updated 4 months ago
• gbouras13 / phold
  Phage Annotation using Protein Structures
  ☆111Updated last month
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆23Updated 2 years ago
• epi2me-labs / wf-clone-validation
  ☆36Updated last month
• EddyRivasLab / easel
  Sequence analysis library used by Eddy/Rivas lab code
  ☆47Updated last week
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆57Updated 4 years ago
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆107Updated last week
• foerstner-lab / gffpandas
  Parse GFF3 into Pandas dataframes
  ☆30Updated last year
• moshi4 / phyTreeViz
  Simple phylogenetic tree visualization python package for phylogenetic analysis
  ☆50Updated 10 months ago
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆34Updated 10 months ago
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆124Updated 3 weeks ago