Alternatives and similar repositories for rich-msa:

Users that are interested in rich-msa are comparing it to the libraries listed below

• KatyBrown / CIAlign
  ☆125Updated 6 months ago
• soedinglab / plass
  sensitive and precise assembly of short sequencing reads
  ☆153Updated 5 months ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆69Updated 3 years ago
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆107Updated 4 months ago
• Russel88 / CRISPRCasTyper
  CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
  ☆99Updated last year
• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆123Updated last week
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆35Updated 6 months ago
• arvestad / alv
  A console-based alignment viewer
  ☆108Updated 2 weeks ago
• dbikard / genomenotebook
  A genome browser in your Jupyter notebook
  ☆30Updated 3 months ago
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆73Updated this week
• foerstner-lab / gffpandas
  Parse GFF3 into Pandas dataframes
  ☆27Updated last year
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆121Updated 3 months ago
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆78Updated 4 months ago
• AnimaTardeb / G4Hunter
  G4Hunter (2012_2015)- IECB - Bordeaux
  ☆13Updated 4 years ago
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆131Updated last week
• Gaius-Augustus / learnMSA
  Learning and Aligning Large Protein Families with support of protein language models.
  ☆21Updated this week
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆54Updated last year
• shenwei356 / perfect-bioinformatic-tools
  What should perfect bioinformatic tools be like?
  ☆106Updated last year
• moshi4 / phyTreeViz
  Simple phylogenetic tree visualization python package for phylogenetic analysis
  ☆48Updated 6 months ago
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆92Updated last week
• steineggerlab / unicore
  Universal and efficient core gene phylogeny with Foldseek and ProstT5
  ☆54Updated last week
• jrjhealey / bioinfo-tools
  Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
  ☆59Updated 4 years ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆55Updated 4 years ago
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆31Updated 3 weeks ago
• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆102Updated 2 weeks ago
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆105Updated this week
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆83Updated last month
• Arcadia-Science / ProteinCartography
  a pipeline to build similarity maps of protein space
  ☆33Updated 3 months ago
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆34Updated 2 years ago
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated 2 years ago