jrjhealey / bioinfo-tools
Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
☆59Updated 4 years ago
Alternatives and similar repositories for bioinfo-tools:
Users that are interested in bioinfo-tools are comparing it to the libraries listed below
- Parse GFF3 into Pandas dataframes☆27Updated last year
- What should perfect bioinformatic tools be like?☆106Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆65Updated 2 months ago
- Protein Alignment and Detection Interface☆61Updated 11 months ago
- Nanopore Plasmid Sequencing☆32Updated last year
- A simple command-line tool to download data from Joint Genome Institute databases☆50Updated 2 years ago
- MGnify genome analysis pipeline☆105Updated this week
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- Fast and flexible ORF finder☆69Updated 3 years ago
- ☆125Updated 6 months ago
- A Pure-Python parser of HMMER3 output☆17Updated 5 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆34Updated 6 months ago
- A package to annotate protein sequences☆55Updated 3 weeks ago
- This repository hosts a large collection of Nextflow snippets☆57Updated last month
- A curated list of awesome curated lists of awesome softwares and resources in bioinformatics and affiliated areas☆39Updated 4 months ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆78Updated 3 months ago
- G4Hunter (2012_2015)- IECB - Bordeaux☆13Updated 4 years ago
- Making bioinformatics fun again☆65Updated 9 months ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆54Updated 7 months ago
- SARS-CoV-2 workflow for nanopore sequence data☆40Updated 3 weeks ago
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆48Updated 6 months ago
- Merging paired-end reads and removing adapters☆44Updated this week
- A versatile toolkit for k-mers with taxonomic information☆77Updated 7 months ago
- PaperBLAST: find papers about a protein or its homologs☆39Updated last month
- Detection of incorrectly labeled sequences across kingdoms☆82Updated 2 years ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated 4 months ago
- Various bioinformatics tutorials☆59Updated last year
- Simple bacterial assembly and annotation pipeline☆68Updated this week
- Snakemake pipelines for nanopore sequencing data archiving and processing☆89Updated 3 years ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆80Updated 11 months ago