Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
☆64Sep 17, 2020Updated 5 years ago
Alternatives and similar repositories for bioinfo-tools
Users that are interested in bioinfo-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Nov 7, 2024Updated last year
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Feb 26, 2026Updated last month
- ☆13Sep 22, 2017Updated 8 years ago
- Multiple sequence alignment visualizer☆33Jan 26, 2023Updated 3 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆15Sep 16, 2025Updated 6 months ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆40Sep 16, 2025Updated 6 months ago
- IS mapping software☆57Dec 3, 2021Updated 4 years ago
- ☆11Mar 10, 2024Updated 2 years ago
- Deprecated : Use https://github.com/drpowell/degust☆44Apr 25, 2017Updated 8 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated 2 weeks ago
- Graphical Representation of Ancestral Sequence Predictions☆12Mar 6, 2023Updated 3 years ago
- Calculate the dn/ds (also pn and ps) value of cds☆14Jul 11, 2020Updated 5 years ago
- Quarto extension that formats code cells into a tabset panel, displaying static and interactive code cells side-by-side with code cell op…☆39May 29, 2025Updated 10 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated 10 months ago
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- A curated database of completed assemblies with taxonomy IDs☆51Mar 21, 2026Updated 3 weeks ago
- Benchmarking scripts for Gaia☆14Apr 10, 2025Updated last year
- Forensic analysis tool useful in backwards computing information from next-generation sequencing data.☆11Jan 20, 2026Updated 2 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- A collection of molecular modelling tools for UCSF Chimera☆18Mar 26, 2019Updated 7 years ago
- The BiomolecularStructures package provides several Bioinformatics-related modules for Julia.☆12Jun 13, 2017Updated 8 years ago
- paml documentation and tutorials☆70Jan 9, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Bioinformatic Tools for study Evolution of metabolic diversity☆41Feb 27, 2024Updated 2 years ago
- A comparative genome scaffolding tool☆16Oct 6, 2018Updated 7 years ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- Repository for general metagenomics Nextflow pipeline☆25Mar 23, 2026Updated 3 weeks ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆48Feb 20, 2026Updated last month
- Remove human reads from a sequencing run☆48Apr 6, 2026Updated last week
- BEAV: Bacterial Element Annotation reVamped☆76Aug 21, 2025Updated 7 months ago
- A collection of useful functions for bioinformatics data analysis☆25Mar 19, 2026Updated 3 weeks ago
- Computation of average nucleotide identity with the use of MMseqs2☆16Dec 11, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Fast protein domain structure embedding+search tool☆28Sep 21, 2025Updated 6 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Jan 4, 2021Updated 5 years ago
- Mol* Volumes and Segmentations Extension☆12Mar 16, 2025Updated last year
- ☆33Updated this week
- Molecular Signatures Database (MSigDB) in a data frame☆16Dec 3, 2018Updated 7 years ago
- Easily download genomes and build BLAST/Bowtie indexes in Python☆22Sep 30, 2022Updated 3 years ago
- Probabilistic inference of viral quasispecies subject to recombination (viral haplotype reconstruction).☆20May 3, 2017Updated 8 years ago