Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
☆65Sep 17, 2020Updated 5 years ago
Alternatives and similar repositories for bioinfo-tools
Users that are interested in bioinfo-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆18Jun 4, 2026Updated 2 months ago
- ☆19Jul 21, 2026Updated 3 weeks ago
- ☆13Sep 22, 2017Updated 8 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated last year
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆15Sep 16, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Calculate the dn/ds (also pn and ps) value of cds☆14Jul 11, 2020Updated 6 years ago
- Multiple sequence alignment visualizer☆35Jan 26, 2023Updated 3 years ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆43Sep 16, 2025Updated 10 months ago
- IS mapping software☆59Dec 3, 2021Updated 4 years ago
- ☆11Mar 10, 2024Updated 2 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆21Mar 27, 2026Updated 4 months ago
- VIPER (Variant InsPector and Expert Rating tool) can be utilised to view variant calls and decide whether or not those are true or false …☆16Jan 17, 2022Updated 4 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A curated database of completed assemblies with taxonomy IDs☆53Jun 7, 2026Updated 2 months ago
- The BiomolecularStructures package provides several Bioinformatics-related modules for Julia.☆12Jun 13, 2017Updated 9 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Minimum plain text representation of kmer sets☆18Jan 30, 2025Updated last year
- Forensic analysis tool useful in backwards computing information from next-generation sequencing data.☆11Jul 27, 2026Updated 2 weeks ago
- A comparative genome scaffolding tool☆16Oct 6, 2018Updated 7 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆50Feb 20, 2026Updated 5 months ago
- A collection of molecular modelling tools for UCSF Chimera☆18Mar 26, 2019Updated 7 years ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- paml documentation and tutorials☆72Jan 9, 2026Updated 7 months ago
- Easily download genomes and build BLAST/Bowtie indexes in Python☆22Sep 30, 2022Updated 3 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆42Feb 27, 2024Updated 2 years ago
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Aug 5, 2021Updated 5 years ago
- collection of thermodynamic models, using ThermoState.jl☆10Nov 28, 2020Updated 5 years ago
- Remove human reads from a sequencing run☆52Jun 29, 2026Updated last month
- A collection of useful functions for bioinformatics data analysis☆26Mar 19, 2026Updated 4 months ago
- Graphical Representation of Ancestral Sequence Predictions☆14Mar 6, 2023Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Jan 4, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- BEAV: Bacterial Element Annotation reVamped☆77Aug 21, 2025Updated 11 months ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆24Feb 22, 2026Updated 5 months ago
- 🛠️🧬 A Software Framework to Manipulate Assembly Graphs☆21Updated this week
- Probabilistic inference of viral quasispecies subject to recombination (viral haplotype reconstruction).☆20May 3, 2017Updated 9 years ago
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Jul 30, 2026Updated last week
- Mol* Volumes and Segmentations Extension☆12Mar 16, 2025Updated last year
- HoCoRT - Remove specific organisms from sequencing reads☆17Jan 5, 2025Updated last year