NBISweden / pipelines-nextflowLinks
A set of workflows written in Nextflow for Genome Annotation.
☆45Updated last year
Alternatives and similar repositories for pipelines-nextflow
Users that are interested in pipelines-nextflow are comparing it to the libraries listed below
Sorting:
- Genome Annotation Without Nightmares☆46Updated 9 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 10 months ago
- Transposable Elements MOvement detection using LOng reads☆25Updated 3 months ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 6 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆75Updated 4 years ago
- perSVade: personalized Structural Variation detection☆40Updated 2 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- ☆26Updated 8 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 5 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Structural variant caller☆55Updated 3 years ago
- Long Reads Annotation pipeline☆72Updated 3 years ago
- ☆83Updated 8 months ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- ☆30Updated 4 years ago
- Rank-based Gene Ontology analysis of gene expression data☆42Updated 2 years ago
- A (very) simple script to QC Hi-C data.☆26Updated 11 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Updated 7 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated last week
- Structural variant merging tool☆55Updated last year
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago