gargammel is an ancient DNA simulator
☆39Oct 31, 2026Updated last week
Alternatives and similar repositories for gargammel
Users that are interested in gargammel are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A post-mapping authentication toolkit for ancient metagenomics☆24Mar 30, 2026Updated 7 months ago
- A pipeline for the analysis of sedimentary ancient mtDNA.☆18Aug 26, 2026Updated 2 months ago
- Ancient microbiome snakemake workflow☆34Jun 12, 2026Updated 4 months ago
- mapDamage: tracking and quantifying damage patterns in ancient DNA sequences☆52Jul 14, 2025Updated last year
- ☆13Oct 19, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Compute postmortem damage patterns and decontaminate ancient genomes☆23Apr 20, 2021Updated 5 years ago
- ☆19Jun 26, 2025Updated last year
- Workflow for processing Illumina sequencing runs for ancient human DNA☆28Oct 29, 2020Updated 6 years ago
- Maximum a posteriori estimate of contamination for ancient samples☆26Sep 28, 2026Updated last month
- mapping pipeline for ancient DNA☆34Oct 22, 2026Updated 2 weeks ago
- Damage parameter estimation for ancient DNA☆20Aug 26, 2026Updated 2 months ago
- Repository containing lists of all published ancient metagenomic (and related) samples and libraries☆87Updated this week
- A simple tool to calculate metrics from a BAM file and filter references with uneven coverages☆26Apr 24, 2026Updated 6 months ago
- A merged read deduplication tool capable to perform merged read deduplication on single end data.☆16Sep 4, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Software to call ROHs☆21Updated this week
- Repository with documentation file of our Jan 22-24 workshop on Computational Population Genetics in Jena, Germany.☆15Aug 14, 2026Updated 2 months ago
- Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.☆11Mar 27, 2020Updated 6 years ago
- Introduction to Ancient Metagenomics Book☆16Sep 20, 2026Updated last month
- Bayesian reconstruction of ancient DNA fragments☆31Updated this week
- ☆12Feb 14, 2023Updated 3 years ago
- ☆24Jun 9, 2021Updated 5 years ago
- ☆15Mar 13, 2026Updated 7 months ago
- ☆11Apr 3, 2026Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A workflow for integrating ancient lineages into present-day phylogenies.☆32Jul 24, 2026Updated 3 months ago
- A tool to infer metagenomic sample composition☆20Oct 10, 2023Updated 3 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆51Oct 19, 2026Updated 2 weeks ago
- ☆14Jul 24, 2026Updated 3 months ago
- A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage☆21Nov 18, 2023Updated 2 years ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆41Oct 12, 2026Updated 3 weeks ago
- GEAR [GEnetic Analysis Repository], contact chenguobo@gmail.com;☆22Dec 31, 2021Updated 4 years ago
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆52May 12, 2026Updated 5 months ago
- Tools for inference of the DFE with dadi☆15Apr 16, 2021Updated 5 years ago
- ☆17Nov 19, 2021Updated 4 years ago
- ☆13Jul 8, 2026Updated 3 months ago
- Here I show how to use Convolutional Neural Networks (CNNs) for Ancient DNA analysis☆15Apr 24, 2019Updated 7 years ago
- ARG-Needle library for representing and analyzing ancestral recombination graphs (ARGs)☆10Nov 21, 2025Updated 11 months ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Feb 15, 2022Updated 4 years ago