grenaud / gargammelLinks
gargammel is an ancient DNA simulator
☆34Updated last year
Alternatives and similar repositories for gargammel
Users that are interested in gargammel are comparing it to the libraries listed below
Sorting:
- Genome wide orthology inference and dNdS estimation☆96Updated last month
- A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).☆92Updated last year
- deep learning prediction of geographic location from individual genome sequences☆51Updated 9 months ago
- Population genetic simulations in R 🌍☆61Updated last week
- software for UCE (and general) phylogenomics☆84Updated 7 months ago
- functions to analyse sanger sequencing reads in R☆103Updated 8 months ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- NGSNGS: Next generation simulator for next generation sequencing data☆54Updated 11 months ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated last year
- Analysis of inference methods on standard population models☆25Updated 3 years ago
- ☆63Updated 4 years ago
- Reconstruction of transmission trees using genomic data☆63Updated 2 years ago
- Fast and accurate sequence demultiplexing☆28Updated 4 months ago
- functions for analyzing phyloseq data☆28Updated 8 months ago
- Implementation of the multiple sequential markovian coalescent☆89Updated 2 months ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 3 months ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- R We There Yet?☆31Updated 7 months ago
- Workflow for processing Illumina sequencing runs for ancient human DNA☆24Updated 5 years ago
- Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself☆43Updated 6 months ago
- ☆44Updated 7 months ago
- Merge transcriptome assemblies☆31Updated 9 years ago
- Estimating Effective Migration Surfaces☆107Updated 2 years ago
- microhaplotype visualizer and analyzer☆20Updated 4 years ago
- phylogenetics tools for linux (and other mostly posix compliant) computers☆122Updated 9 months ago
- mapDamage: tracking and quantifying damage patterns in ancient DNA sequences☆46Updated 3 months ago
- Error correction for Illumina RNA-seq reads☆67Updated last year
- Tutorial on using E-utilities☆23Updated 7 months ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆59Updated 2 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year