grenaud / gargammel
gargammel is an ancient DNA simulator
☆28Updated 9 months ago
Alternatives and similar repositories for gargammel:
Users that are interested in gargammel are comparing it to the libraries listed below
- microhaplotype visualizer and analyzer☆18Updated 3 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- NGSNGS: Next generation simulator for next generation sequencing data☆50Updated 5 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆72Updated 3 years ago
- Rank-based Gene Ontology analysis of gene expression data☆41Updated 2 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 4 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 9 years ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 3 years ago
- Conditional Reciprocal Best Blast☆42Updated 8 years ago
- ☆22Updated 6 years ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 5 years ago
- Interim data for the Darwin Tree of Life Project☆33Updated 4 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated last year
- A set of functions to visualise genotypes based on a VCF☆85Updated 3 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆57Updated 7 years ago
- ☆43Updated last month
- Automated de novo assembly of whole chloroplast genomes.☆45Updated 7 months ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- Genome wide orthology inference and dNdS estimation☆90Updated last year
- Fast and accurate sequence demultiplexing☆27Updated 2 months ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- Estimate recombination rates from population genetic data☆66Updated 4 years ago
- simple examples of using supervised machine learning for population genetics inference☆38Updated 7 years ago
- Population genetic simulations in R 🌍☆58Updated 3 weeks ago
- Visualize whole genome alignments as linear maps☆72Updated 7 months ago
- Benchmark datasets for WGS analysis☆37Updated 5 years ago
- ☆57Updated 2 years ago
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆38Updated last year