grenaud / gargammelView external linksLinks
gargammel is an ancient DNA simulator
☆37Jul 22, 2024Updated last year
Alternatives and similar repositories for gargammel
Users that are interested in gargammel are comparing it to the libraries listed below
Sorting:
- ☆12Oct 19, 2023Updated 2 years ago
- Workflow for processing Illumina sequencing runs for ancient human DNA☆25Oct 29, 2020Updated 5 years ago
- Support material for the "Comparative Genomics Laboratory" classes of the MSc in Biodiversity and Evolution at the University of Bologna.☆13Jan 13, 2026Updated last month
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 6 years ago
- Software to call ROHs☆17Oct 15, 2025Updated 3 months ago
- Compute postmortem damage patterns and decontaminate ancient genomes☆19Apr 20, 2021Updated 4 years ago
- Maximum a posteriori estimate of contamination for ancient samples☆23Nov 4, 2025Updated 3 months ago
- ☆51Jan 28, 2026Updated 2 weeks ago
- An R package for interpretable machine learning. R.ROSETTA uses ROSETTA toolkit that supports data mining and knowledge discovery based o…☆21Jan 27, 2026Updated 2 weeks ago
- A tool to infer metagenomic sample composition☆20Oct 10, 2023Updated 2 years ago
- ☆22Jun 9, 2021Updated 4 years ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 3 weeks ago
- ☆20Apr 15, 2025Updated 9 months ago
- Python programming workshop for bioinformatics☆10Jul 13, 2021Updated 4 years ago
- Radiocarbon calibration command line tool and Haskell module☆11Nov 24, 2025Updated 2 months ago
- Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.☆11Mar 27, 2020Updated 5 years ago
- An R package to call oomycete effectors☆11Aug 31, 2023Updated 2 years ago
- [DEPRECATED] An R package to pre-process bulk EKG data and detect the physiological peaks☆12Aug 22, 2016Updated 9 years ago
- Parse and Render 3D Molecular Structures in R☆39Nov 17, 2025Updated 2 months ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆138Sep 16, 2025Updated 4 months ago
- Standalone C library for assembling Illumina short reads in small regions☆72Dec 15, 2022Updated 3 years ago
- RcppProgress R package: An interruptible progress bar with OpenMP support for c++ in R packages☆30Jun 4, 2024Updated last year
- Selective Copying Task with Mamba Model. This repository contains a simple implementation for reproducing the selective copying task with…☆12Jun 3, 2024Updated last year
- An open-source carbon box model implementation built on JAX.☆11Apr 2, 2024Updated last year
- Code for paper: Localized matrix factorization for recommendation based on matrix block diagonal forms☆10Jan 27, 2015Updated 11 years ago
- This is a tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.☆14Aug 6, 2024Updated last year
- Estimation of isoelectric point of peptides and proteins using support vector machines (SVM).☆10Sep 10, 2016Updated 9 years ago
- Genevieve client: using GenNotes, report ClinVar for individual genomes & add consensus notes☆10Aug 2, 2016Updated 9 years ago
- ☆11Apr 21, 2023Updated 2 years ago
- Parallel processing with sequential output, respecting order of input☆10Feb 20, 2023Updated 2 years ago
- Official repository of pyArchInit since Python 3 porting☆13Updated this week
- Crossmapped phenotype ontologies for the oncology domain☆13Feb 3, 2026Updated last week
- ☆12Aug 23, 2023Updated 2 years ago
- ☆10Dec 8, 2021Updated 4 years ago
- Mathematica Notebooks☆14Jun 16, 2013Updated 12 years ago
- Find Functions and their Dependencies☆13Feb 21, 2022Updated 3 years ago
- paleofire package☆14Dec 14, 2021Updated 4 years ago
- ☆11Feb 3, 2026Updated last week
- ☆11Dec 1, 2020Updated 5 years ago