gargammel is an ancient DNA simulator
☆39Jul 22, 2024Updated last year
Alternatives and similar repositories for gargammel
Users that are interested in gargammel are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflow for processing Illumina sequencing runs for ancient human DNA☆26Oct 29, 2020Updated 5 years ago
- Software to call ROHs☆20Apr 9, 2026Updated 2 months ago
- ☆12Oct 19, 2023Updated 2 years ago
- A simple tool to calculate metrics from a BAM file and filter references with uneven coverages☆22Apr 24, 2026Updated last month
- A post-mapping authentication toolkit for ancient metagenomics☆21Mar 30, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Support material for the "Comparative Genomics Laboratory" classes of the MSc in Biodiversity and Evolution at the University of Bologna.☆13Feb 27, 2026Updated 3 months ago
- ☆15Mar 13, 2026Updated 3 months ago
- ☆13Oct 13, 2023Updated 2 years ago
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 6 years ago
- Maximum a posteriori estimate of contamination for ancient samples☆24Nov 4, 2025Updated 7 months ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Feb 15, 2022Updated 4 years ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- Course Materials for AAAGs 2018 Workshop☆13Aug 10, 2018Updated 7 years ago
- "Archaeogenetics analysis of Anatolia"☆14Jan 27, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- EM-PCA for Ultra-low Coverage Sequencing Data☆19Dec 18, 2025Updated 6 months ago
- Repository with documentation file of our Jan 22-24 workshop on Computational Population Genetics in Jena, Germany.☆15May 9, 2019Updated 7 years ago
- Parsimony on tree sequences☆13Jun 27, 2025Updated 11 months ago
- A workflow for integrating ancient lineages into present-day phylogenies.☆32Jul 7, 2025Updated 11 months ago
- multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.☆11Oct 10, 2022Updated 3 years ago
- Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.☆12Jun 23, 2025Updated 11 months ago
- ☆15Jul 17, 2019Updated 6 years ago
- ☆15Jun 26, 2025Updated 11 months ago
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Bioinformatics with R cookbook☆14Apr 3, 2019Updated 7 years ago
- ☆52May 12, 2026Updated last month
- ☆23Jun 9, 2021Updated 5 years ago
- Repository containing lists of all published ancient metagenomic (and related) samples and libraries☆83Updated this week
- Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.☆11Mar 27, 2020Updated 6 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆12Nov 15, 2024Updated last year
- Tool for monitoring and anomaly detection of 3D Concrete Printing using Computer Vision☆14Oct 18, 2022Updated 3 years ago
- Introduction to data driven life sciences☆21Jul 7, 2025Updated 11 months ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆97Updated this week
- Client for the Bioconductor AnnotationHub web resource☆19Apr 29, 2026Updated last month
- Drosophila transposable element canonical sequences☆30Jul 11, 2022Updated 3 years ago
- HyPhy tutorials☆11Apr 9, 2018Updated 8 years ago
- mapDamage: tracking and quantifying damage patterns in ancient DNA sequences☆49Jul 14, 2025Updated 11 months ago
- python multiprocessing download file☆20Aug 27, 2017Updated 8 years ago
- Data and scripts used in the oneKP capstone analyses☆13Apr 5, 2022Updated 4 years ago