Board InteGrating Metagenome-Assembled Genomes
☆10Dec 16, 2025Updated 10 months ago
Alternatives and similar repositories for BIgMAG
Users that are interested in BIgMAG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 5 months ago
- A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 or Mpox genomes. Workflow is developed in collaboration wi…☆11Sep 18, 2026Updated last month
- Strain-level abundance analysis tool for short-read metagenomics☆12Jul 12, 2026Updated 4 months ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆13Jan 23, 2026Updated 9 months ago
- A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.☆42Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Parallelised and automated construction of metagenomic classifier databases of different tools☆22Updated this week
- More scalable dereplication for metagenome assembled genomes☆93Updated this week
- Lineage-aware Kraken2 refinement for long-read metagenomics☆20Updated this week
- A data specification for harmonizing One Health AMR pathogen genomics contextual data. The specification provides standardized (ontology-…☆11Jun 15, 2026Updated 4 months ago
- Extract SNPs and accessory differences in closely related bacterial genomes from k-mers☆10Jan 6, 2024Updated 2 years ago
- Population analysis PIPEline 🛠🧬☆28Mar 2, 2026Updated 8 months ago
- SIB First Steps with UNIX course☆13Sep 3, 2025Updated last year
- Pipelines used in the lab.☆16Mar 26, 2025Updated last year
- SPARQL cheatsheet☆15Jan 25, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆39Aug 28, 2026Updated 2 months ago
- ☆20Apr 24, 2025Updated last year
- ☆10Aug 18, 2024Updated 2 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆284Mar 20, 2025Updated last year
- Damage parameter estimation for ancient DNA☆20Aug 26, 2026Updated 2 months ago
- A user-friendly tool for quality control and interactive analysis of microbiome data☆10Jan 9, 2025Updated last year
- pathogen agnostic general workflow for genome assembly of Illumina paired-end sequence data☆13Jan 6, 2026Updated 10 months ago
- nf-core/datasync is a system operation pipeline that provides several workflows for handling system operation / automation tasks☆11Updated this week
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Metagenomic Estimation of Dietary Intake and Content.☆48Aug 5, 2026Updated 3 months ago
- ☆39Nov 8, 2026Updated last week
- A command-line interface for MD-Repo service☆10Oct 6, 2026Updated last month
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆39Feb 26, 2023Updated 3 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆38Jun 4, 2026Updated 5 months ago
- ☆21Jul 23, 2026Updated 3 months ago
- R package to predict microbial loads☆22Updated this week
- sunburst plots for taxonomy - working to update Krona☆48Sep 22, 2025Updated last year
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Nov 3, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Script to check required packages for Schrödinger suite on Linux machine☆13Sep 17, 2026Updated last month
- ☆24Dec 5, 2018Updated 7 years ago
- A short list of Nextflow-related branch-lessons for beginners☆10Mar 7, 2025Updated last year
- Interactive tools for metagenome visualization and binning in R☆27Jun 28, 2018Updated 8 years ago
- 3D quantitative label-free imaging with phase and polarization☆19May 15, 2025Updated last year
- A pipeline for extracting Presence-Absence Variations (PAVs) in eukaryotic and prokaryotic genomes across multiple assemblies.☆11May 21, 2026Updated 5 months ago
- From metagenomes to epitopes and beyond☆12Updated this week
Are these results useful?