Alternatives and similar repositories for ACE

Users that are interested in ACE are comparing it to the libraries listed below

• ihh / trajectory-likelihood
  Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)
  ☆14Updated 3 years ago
• phylovi / bito
  Python-interface C++ library for Bayesian phylogenetics via optimization
  ☆39Updated last year
• GPZ-Bioinfo / tmap
  topological data analysis of population-scale microbiomes
  ☆31Updated 2 years ago
• harmslab / epistasis
  A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
  ☆35Updated 2 years ago
• Emergent-Behaviors-in-Biology / community-simulator
  Simulate microbial community batch culture experiments.
  ☆42Updated last year
• flatironinstitute / catvae
  Categorical Variational Autoencoders
  ☆24Updated 3 years ago
• phievo / phievo
  Software for in silico evolution - Paul François' group McGill University
  ☆10Updated 3 years ago
• WarrenWeckesser / heatmapcluster
  A python library for generating a clustered heatmap with dendrograms.
  ☆34Updated 3 years ago
• ElisabethRoesch / Perspective_Julia_for_Biologists
  Online material for the Perspective: "Julia for Biologists" presented at JuliaCon 2021: https://www.youtube.com/watch?v=gRj7E5kYG1I
  ☆101Updated 3 years ago
• debbiemarkslab / MuE
  A package for making MuE observation models in Edward2.
  ☆13Updated 4 years ago
• dmnfarrell / pybioviz
  bioinformatics visualization tools with pyviz/bokeh
  ☆20Updated 2 years ago
• schlegelp / bioRxiv-LaTeX-template
  LaTeX template to create a compiled PDF (text+figures) e.g. for bioRxiv.org
  ☆21Updated 9 years ago
• gitter-lab / ml4bio
  A graphical interface for sklearn classification to introduce machine learning to biologists
  ☆13Updated 8 months ago
• phiweger / nanotext
  Proteins as words, genomes as documents.
  ☆19Updated 5 years ago
• quantumbrake / cayenne
  Python package for stochastic simulations
  ☆18Updated last week
• gitter-lab / ssps
  Sparse Signaling Pathway Sampling: MCMC for signaling pathway inference
  ☆14Updated 3 years ago
• asntech / postdoc-funding-schemes
  Funding schemes and travel grant opportunities for postdocs
  ☆55Updated 6 years ago
• mircare / Brewery
  State-of-the-art ab initio prediction of 1D protein structure annotations
  ☆14Updated 4 years ago
• christiaanjs / treeflow
  ☆13Updated last year
• knightlab-analyses / multiomic-cooccurrences
  ☆25Updated 5 years ago
• lingfeiwang / findr
  Fast Inference of Networks from Directed Regulations
  ☆22Updated last year
• de-Boer-Lab / CisRegModels
  Scripts for building computational models of gene regulation with tensorflow
  ☆27Updated 2 years ago
• usnistgov / lantern
  Interpretable genotype-phenotype landscape modeling
  ☆36Updated last year
• sjspielman / pyvolve
  Python library to simulate evolutionary sequence data
  ☆80Updated 3 years ago
• SBRG / precise-db
  A high-fidelity E. coli RNA-seq compendium
  ☆33Updated 4 years ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 6 years ago
• dcjones / polee
  Analyzing RNA-Seq with approximate likelihood
  ☆26Updated 4 years ago
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆60Updated 4 years ago
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆71Updated last month
• dpryan79 / Misc
  Misc. utilities
  ☆11Updated 6 years ago