Fast and flexible code for solving the inverse Ising/Potts inference problem
☆28May 12, 2023Updated 2 years ago
Alternatives and similar repositories for ACE
Users that are interested in ACE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Convenient Interface to Inverse Ising (ConIII)☆21Oct 9, 2025Updated 6 months ago
- Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)☆14Sep 17, 2022Updated 3 years ago
- Faster, more accurate and entirely open source method for predicting contacts in proteins☆12May 21, 2018Updated 7 years ago
- Contact map alignment☆16May 10, 2018Updated 7 years ago
- Graphical Representation of Ancestral Sequence Predictions☆12Mar 6, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- NGSTools☆16Mar 3, 2017Updated 9 years ago
- Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - Julia module☆23Jan 27, 2022Updated 4 years ago
- Dynamical information enables inference of gene regulation at single-cell scale☆12Jun 9, 2025Updated 10 months ago
- ☆10Sep 20, 2022Updated 3 years ago
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Apr 14, 2026Updated 2 weeks ago
- Variational Estimation of Latent Velocity from Expression with Time-resolution☆13May 30, 2024Updated last year
- Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations☆11Sep 18, 2025Updated 7 months ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Dec 20, 2022Updated 3 years ago
- Code for analyzing multi-electrode array recordings (spikes & LFP) for Trujillo, Gao, Negraes et al., 2019.☆16Apr 23, 2020Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆18Nov 18, 2025Updated 5 months ago
- Annotate sequences from BLAST against KEGG DB with KO numbers and summarize them in KEGG modules.☆23Dec 27, 2018Updated 7 years ago
- Load bioinformatics datasets into a local database☆11Apr 8, 2025Updated last year
- locally query the ncbi taxonomy☆39Dec 8, 2022Updated 3 years ago
- wrangling and model-free analysis of microbial growth curve data in R with gcplyr☆38Apr 23, 2026Updated last week
- DarkHorse2 source code☆10May 3, 2022Updated 3 years ago
- manifold metric and correction techniques for (Bayesian) GPLVM from GPy☆12Mar 1, 2020Updated 6 years ago
- Postprocessing gadgets for output generated by RevBayes☆14Mar 20, 2026Updated last month
- Urai AE, de Gee JW, Tsetsos K, Donner TH (2019) Choice history biases subsequent evidence accumulation. eLife☆15Jul 20, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tools for spatial and temporal autocorrelation