Multigrate: multiomic data integration for single-cell genomics
☆32Mar 16, 2026Updated this week
Alternatives and similar repositories for multigrate
Users that are interested in multigrate are comparing it to the libraries listed below
Sorting:
- Camiel's scATAC-seq analysis pipeline☆13Apr 15, 2024Updated last year
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆38Dec 17, 2025Updated 3 months ago
- A Python package for jointly analyzing multimodal single-cell sequencing data☆26Jan 17, 2025Updated last year
- ☆12Apr 16, 2021Updated 4 years ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆42Dec 1, 2025Updated 3 months ago
- ☆65Updated this week
- A Cloud Pipeline to Analyze Long Read Sequencing Data from Oxford Nanopore and PacBio Sequencers☆12Jan 30, 2023Updated 3 years ago
- ☆12Nov 7, 2025Updated 4 months ago
- ☆21Jun 17, 2024Updated last year
- ☆34Apr 15, 2025Updated 11 months ago
- ☆15Mar 6, 2025Updated last year
- A foundation model for single-cell epigenomic data☆60Jan 6, 2026Updated 2 months ago
- Snakemake pipeline for the preprocessing, alignment, QC, and quantification of spatial transcriptomics data - both short-read and long-re…☆11Mar 13, 2026Updated last week
- Probabilistic gene expression barcodes for cell type annotation☆26Apr 26, 2022Updated 3 years ago
- ☆31Apr 9, 2022Updated 3 years ago
- The analysis repository for the Open Pediatric Cancer Project☆25Jul 9, 2025Updated 8 months ago
- FISH Iterative Cell Typing☆11Mar 24, 2024Updated last year
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 5 years ago
- ☆29Dec 15, 2021Updated 4 years ago
- ☆25Jan 18, 2022Updated 4 years ago
- ☆10May 31, 2022Updated 3 years ago
- ☆33Feb 21, 2024Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆44Jun 14, 2020Updated 5 years ago
- epigenome analysis to rank transcription factors☆32Feb 2, 2023Updated 3 years ago
- Code for "Revisiting Batch Norm Initialization".☆12Jul 14, 2022Updated 3 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆26Jan 11, 2023Updated 3 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- Code and documentation for the curation of cellxgene datasets☆53Mar 1, 2026Updated 3 weeks ago
- Computational framework for dataset integration☆11Jul 21, 2023Updated 2 years ago
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆10Jan 23, 2023Updated 3 years ago
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆12Mar 13, 2022Updated 4 years ago
- Sync changes in Paperpile to a Notion database.☆14Aug 30, 2022Updated 3 years ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆33Jan 3, 2023Updated 3 years ago
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆13Dec 27, 2023Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 2 years ago
- Post hoc cell type classification of single-cell RNA-sequencing data.☆10Oct 5, 2021Updated 4 years ago
- Novel joint clustering method with scRNA-seq and CITE-seq data☆10Jun 22, 2021Updated 4 years ago