theislab / multigrateLinks
Multigrate: multiomic data integration for single-cell genomics
☆26Updated this week
Alternatives and similar repositories for multigrate
Users that are interested in multigrate are comparing it to the libraries listed below
Sorting:
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated 3 months ago
- ☆53Updated 7 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆39Updated 9 months ago
- ☆31Updated 2 months ago
- ☆26Updated last year
- CAST package☆40Updated 8 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆30Updated last month
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 4 months ago
- ☆28Updated last month
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆33Updated last week
- SCENIC+ analyses☆14Updated last year
- Spatial direct messaging detected by bivariate Moran☆27Updated last month
- ☆48Updated last month
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆36Updated 10 months ago
- Single cell omics biology annotations☆51Updated 2 months ago
- Reproducing the experiments of the DestVI paper☆18Updated 3 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆43Updated 2 years ago
- ☆43Updated 7 months ago
- An R package for performing cell typing in SMI and other single cell data☆37Updated last month
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆76Updated 3 years ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆50Updated 11 months ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated last year
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆21Updated 2 years ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆36Updated 11 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆82Updated last month
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆54Updated last month