Alternatives and similar repositories for marbits-public:

Users that are interested in marbits-public are comparing it to the libraries listed below

• songweizhi / Tax4Fun2_short_tutorial
  A short tutorial for Tax4Fun2
  ☆17Updated 8 months ago
• cafferychen777 / ggpicrust2
  Make Picrust2 Output Analysis and Visualization Easier
  ☆130Updated this week
• benjjneb / decontam
  Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
  ☆156Updated 2 years ago
• colinbrislawn / unite-train
  🍄 Qiime2 ITS classifiers for the UNITE database
  ☆37Updated last month
• UMNFuN / FUNGuild
  FUNGuild: parsing OTUs into functional guilds
  ☆117Updated last year
• DaliangNing / iCAMP1
  Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)
  ☆74Updated 3 months ago
• anw-sh / silva-138_classifiers
  Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes
  ☆13Updated 10 months ago
• qichao1984 / NCyc
  ☆48Updated 4 years ago
• RiceMicrobiome / Edwards-et-al.-2014
  ☆14Updated 10 years ago
• gmteunisse / fantaxtic
  Fantaxtic - Nested Bar Plots for Phyloseq Data
  ☆30Updated 9 months ago
• MadsAlbertsen / multi-metagenome
  Scripts and tutorials on how to assemble individual microbial genomes from metagenomes
  ☆80Updated 8 years ago
• pr2database / pr2database
  Protist Ribosomal Reference database (PR2) - SSU rRNA gene database
  ☆80Updated last month
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆65Updated last year
• picrust / picrust
  Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…
  ☆89Updated 2 years ago
• Saskia-Oosterbroek / decona
  fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads
  ☆47Updated 9 months ago
• PacificBiosciences / HiFi-16S-workflow
  Nextflow pipeline to analyze PacBio HiFi full-length 16S data
  ☆76Updated 2 months ago
• ParkinsonLab / Metatranscriptome-Workshop
  Metatranscriptomics Tutorial
  ☆62Updated last year
• mdsufz / MuDoGeR
  MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.
  ☆88Updated 8 months ago
• stegen / Stegen_etal_ISME_2013
  Code for running analyses carried out in Stegen et al. 2013, ISME
  ☆29Updated 7 years ago
• microsud / Tools-Microbiome-Analysis
  A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
  ☆113Updated 2 years ago
• SvetlanaUP / Microbiome-etc-Podcasts
  This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.
  ☆29Updated 5 months ago
• nickjcroucher / gubbins
  Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
  ☆188Updated last month
• agmcfarland / r_phylogenetics_worshop
  Using ggtree to build phylogenetic trees
  ☆46Updated 6 months ago
• microbiota / amplicon
  Statistics and visualization for amplicon data
  ☆70Updated 2 years ago
• SchlossLab / MiSeq_WetLab_SOP
  ☆60Updated 5 years ago
• chklovski / CheckM2
  Assessing the quality of metagenome-derived genome bins using machine learning
  ☆206Updated last month
• bjtully / BioData
  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
  ☆73Updated 2 years ago
• Zymo-Research / figaro
  An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters
  ☆87Updated 9 months ago
• Gibbons-Lab / isb_course_2021
  Materials and presentations for the 2021 ISB Virtual Microbiome Series.
  ☆25Updated 2 years ago
• TongZhou2017 / itol.toolkit
  Helper Functions for Interactive Tree Of Life (iTOL)
  ☆169Updated 5 months ago