marbits-icm / marbits-publicLinks
☆17Updated 2 weeks ago
Alternatives and similar repositories for marbits-public
Users that are interested in marbits-public are comparing it to the libraries listed below
Sorting:
- A short tutorial for Tax4Fun2☆19Updated 10 months ago
- FUNGuild: parsing OTUs into functional guilds☆119Updated last year
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆78Updated 4 months ago
- ☆49Updated 4 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆31Updated 11 months ago
- Make Picrust2 Output Analysis and Visualization Easier☆138Updated last week
- Code for running analyses carried out in Stegen et al. 2013, ISME☆30Updated 7 years ago
- 🍄 Qiime2 ITS classifiers for the UNITE database☆40Updated 3 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆158Updated 2 years ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆81Updated 2 weeks ago
- fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads☆48Updated 10 months ago
- Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes☆14Updated 11 months ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆47Updated 4 years ago
- Various functions for analysis of microbial community data☆45Updated 2 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated 10 months ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆32Updated this week
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆67Updated last year
- ☆14Updated 10 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆214Updated 3 months ago
- ☆60Updated 5 years ago
- ☆15Updated 2 years ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆54Updated 3 months ago
- ☆75Updated last year
- This is an R package for element cycle analysis using metagenomic data.☆36Updated 6 months ago
- This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.☆29Updated 7 months ago
- Materials and presentations for the 2021 ISB Virtual Microbiome Series.☆25Updated 2 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆46Updated 3 years ago
- MicrobiomeReview☆11Updated 2 years ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆77Updated 4 months ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆47Updated 7 months ago