marbits-icm / marbits-publicLinks
☆17Updated last month
Alternatives and similar repositories for marbits-public
Users that are interested in marbits-public are comparing it to the libraries listed below
Sorting:
- A short tutorial for Tax4Fun2☆20Updated 10 months ago
- FUNGuild: parsing OTUs into functional guilds☆119Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆217Updated 3 months ago
- 🍄 Qiime2 ITS classifiers for the UNITE database☆42Updated 3 months ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆30Updated 7 years ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆376Updated last month
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆81Updated 5 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆217Updated last week
- Code, unit tests, and tutorials for running PICRUSt2☆361Updated 3 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆260Updated 7 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆198Updated 5 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆160Updated 2 years ago
- Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes☆14Updated last year
- Rapid large-scale prokaryote pan genome analysis☆353Updated 3 years ago
- Make Picrust2 Output Analysis and Visualization Easier☆143Updated last week
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆197Updated 3 months ago
- A user-friendly workflow for phylogenomics☆214Updated last week
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆430Updated last year
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆152Updated 3 months ago
- Scan contig files against PubMLST typing schemes☆238Updated 2 years ago
- geNomad: Identification of mobile genetic elements☆249Updated this week
- BSR-Based Allele Calling Algorithm☆148Updated 3 weeks ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆346Updated last year
- fast phage annotation program☆168Updated 3 weeks ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆233Updated last week
- A tool for generating consensus long-read assemblies for bacterial genomes☆325Updated last year
- Helper Functions for Interactive Tree Of Life (iTOL)☆172Updated 2 months ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆210Updated last week
- Assembly and binning of metagenomes☆241Updated last week
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆206Updated 11 months ago