Alternatives and similar repositories for BBTools

Users that are interested in BBTools are comparing it to the libraries listed below

• nf-core / nft-utils
  nf-test utility functions
  ☆11Updated 3 weeks ago
• mingyi-wang / somatic-combiner
  ☆11Updated last month
• NGSEP / NGSEPcore
  NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. A complete list of functionalities …
  ☆56Updated last week
• timmassingham / simNGS
  Simulate short-reads datasets using probabilistic models
  ☆11Updated 12 years ago
• dnbaker / bonsai
  Bonsai: Fast, flexible taxonomic analysis and classification
  ☆71Updated last year
• seqan / raptor
  A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
  ☆53Updated last week
• gorpipe / gor
  GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular …
  ☆41Updated 2 weeks ago
• mourisl / centrifuger
  Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.
  ☆75Updated last month
• Illumina / gvcfgenotyper
  A utility for merging and genotyping Illumina-style GVCFs.
  ☆33Updated 6 years ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆46Updated 6 years ago
• ekg / fastahack
  utilities for indexing and sequence extraction from FASTA files
  ☆59Updated 4 years ago
• harry-thorpe / piggy
  Pipeline for analysing intergenic regions in bacteria
  ☆40Updated 6 years ago
• yechengxi / DBG2OLC
  A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…
  ☆66Updated 5 years ago
• sheffield-bioinformatics-core / periscope
  A tool to quantify sub-genomic RNA (sgRNA) expression in SARS-CoV-2 artic network amplicon nanopore sequencing data.
  ☆17Updated 3 years ago
• will-rowe / hulk
  Histosketching Using Little Kmers
  ☆56Updated 2 years ago
• bcgsc / ntEdit
  ✏️ Genome assembly polishing & SNV detection
  ☆71Updated last month
• bcgsc / ntJoin
  🔗Genome assembly scaffolder using minimizer graphs
  ☆85Updated last year
• ktmeaton / NCBImeta
  Efficient and comprehensive metadata acquisition from the NCBI databases (includes SRA).
  ☆50Updated 3 years ago
• HingeAssembler / HINGE
  Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"
  ☆63Updated 5 years ago
• cschin / Peregrine
  Peregrine: Fast Genome Assembler Using SHIMMER Index
  ☆102Updated 3 years ago
• marbl / MetaCarvel
  MetaCarvel: A scaffolder for metagenomes
  ☆14Updated last year
• tlemane / kmindex
  Index kmtricks bf matrices
  ☆45Updated last month
• liyao001 / BioQueue
  A novel pipeline framework to accelerate bioinformatics analysis
  ☆30Updated last month
• tanghaibao / quota-alignment
  Guided synteny alignment between duplicated genomes (within specified quota constraint)
  ☆59Updated 8 years ago
• jltsiren / gcsa2
  BWT-based index for graphs
  ☆73Updated 8 months ago
• annalam / seqkit
  Toolkit for manipulating FASTA and SAM files
  ☆20Updated last year
• guyleonard / orthomcl_tools
  A couple of tools I find indispensable for post orthomcl down-stream analysis.
  ☆11Updated 6 years ago
• aquaskyline / SOAP3-dp
  To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…
  ☆31Updated last year
• alesssia / YAMP
  YAMP: Yet Another Metagenomic Pipeline
  ☆60Updated 2 years ago
• mcveanlab / mccortex
  De novo genome assembly and multisample variant calling
  ☆112Updated 6 years ago