edamame-course / MetagenomeLinks
☆23Updated 7 years ago
Alternatives and similar repositories for Metagenome
Users that are interested in Metagenome are comparing it to the libraries listed below
Sorting:
- Statistical analysis for sparse high-throughput sequencing☆69Updated 9 months ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 5 months ago
- A tutorial on methods of 16S analysis with QIIME 1☆70Updated 6 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆55Updated 3 years ago
- Course material for the metagenomics course☆44Updated 3 years ago
- A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).☆92Updated last year
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 9 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆58Updated last year
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- Metagenomics Workshop☆28Updated 8 years ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Micro 612 genomics workshop☆37Updated 4 years ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Updated 3 weeks ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆47Updated 8 years ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- ☆78Updated last year
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacteria…☆45Updated last year
- ☆32Updated 2 years ago
- Rapid and scalable correlation estimation for compositional data☆93Updated last year
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 6 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago