Pan-genomic sequence analysis
☆46Jul 11, 2022Updated 3 years ago
Alternatives and similar repositories for Panseq
Users that are interested in Panseq are comparing it to the libraries listed below
Sorting:
- ☆13May 27, 2025Updated 9 months ago
- Detecting recombination of viral lineages☆11Dec 23, 2025Updated 2 months ago
- Visualization of the pan-genome output by panX☆67Jun 16, 2025Updated 8 months ago
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 3 years ago
- ☆11Sep 16, 2021Updated 4 years ago
- Provides easy read/write access to genomic tracks☆22Mar 18, 2016Updated 9 years ago
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆27Aug 26, 2024Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Apr 13, 2020Updated 5 years ago
- ☆10Mar 24, 2025Updated 11 months ago
- A python program that uses ReadBack phased haplotypes in population of samples and returns extended haplotype blocks.☆15Oct 30, 2024Updated last year
- Metagenomic binning suite☆29Sep 30, 2022Updated 3 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Mar 19, 2021Updated 4 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- Computation of average nucleotide identity with the use of MMseqs2☆15Dec 11, 2024Updated last year
- Materials for Spring 2021 Applied Genomics Course☆54Apr 21, 2021Updated 4 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆10Jun 23, 2018Updated 7 years ago
- TreeCmp: comparison of trees in polynomial time☆14Aug 25, 2025Updated 6 months ago
- Predicting biosynthetic gene clusters in genomes☆42Nov 26, 2013Updated 12 years ago
- D3 based visualisation for comparative genomics☆15Oct 6, 2016Updated 9 years ago
- Long read QC, assembly and scaffolding pipeline☆13Jul 13, 2020Updated 5 years ago
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- A tool to circularize genome assemblies☆253Apr 6, 2024Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63May 18, 2020Updated 5 years ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Jan 14, 2026Updated last month
- Bioinformatics scripts for genome analysis☆17Oct 26, 2022Updated 3 years ago
- ☆18Nov 21, 2024Updated last year
- Plot CNV data with a genome viewer in R☆15Apr 5, 2017Updated 8 years ago
- 🏖️ The EGF Collection of Useful Bio Apps - Web demos of EGF software☆20Dec 10, 2022Updated 3 years ago
- Population analysis PIPEline 🛠🧬☆22Feb 3, 2026Updated 3 weeks ago
- Nanopore data assembler☆167Mar 27, 2022Updated 3 years ago
- Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences☆18Jan 19, 2023Updated 3 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Jun 26, 2018Updated 7 years ago
- Visualize and perform a multitude of operations on newick files☆17Mar 7, 2022Updated 3 years ago
- 💫 Computer-aided DNA assembly validation and identification from restriction digests.☆15May 29, 2025Updated 9 months ago
- ☆20Jun 15, 2024Updated last year
- A dotplot generator for large chromosomes☆43Oct 3, 2023Updated 2 years ago
- Methods to determine sequence element (unitig) presence/absence☆23Nov 24, 2025Updated 3 months ago
- Multiplex Primer Design☆22Oct 30, 2020Updated 5 years ago