Alternatives and similar repositories for Panseq

Users that are interested in Panseq are comparing it to the libraries listed below

• sanger-pathogens / assembly_improvement
  Improve the quality of a denovo assembly by scaffolding and gap filling
  ☆57Updated 5 years ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆68Updated 7 years ago
• AliTVTeam / AliTV
  Visualize whole genome alignments as linear maps
  ☆74Updated 2 weeks ago
• rhysf / Synima
  Synteny Imager
  ☆65Updated last month
• Shamir-Lab / Recycler
  This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…
  ☆58Updated 4 years ago
• groupschoof / AHRD
  High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.
  ☆67Updated 2 years ago
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆68Updated 4 years ago
• kjenike / panagram
  ☆68Updated this week
• marbl / harvest
  ☆53Updated 4 years ago
• thackl / minidot
  Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2
  ☆77Updated 9 years ago
• jordanlab / stringMLST
  Fast k-mer based tool for multi locus sequence typing (MLST)
  ☆45Updated 5 years ago
• katholt / RedDog
  ☆37Updated 3 years ago
• jts / assembly_accuracy
  tools for assessing the accuracy of genome assemblies
  ☆35Updated last year
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆63Updated 5 years ago
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆57Updated 3 years ago
• nathanweeks / exonerate
  A fork of exonerate: a generic tool for sequence alignment
  ☆71Updated 2 years ago
• ddarriba / prottest3
  Automatically exported from code.google.com/p/prottest3
  ☆37Updated 8 years ago
• enormandeau / go_enrichment
  Transcripts annotation and GO enrichment Fisher tests
  ☆27Updated 2 years ago
• fanglab / nanodisco
  nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…
  ☆72Updated 3 years ago
• apetkau / orthomcl-pipeline
  Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/
  ☆80Updated 5 years ago
• xfengnefx / hifiasm-meta
  hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.
  ☆69Updated 2 months ago
• KamilSJaron / k-mer-approaches-for-biodiversity-genomics
  k-mer learning materials
  ☆83Updated 11 months ago
• mapleforest / HaploMerger2
  ☆45Updated 9 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆59Updated 2 years ago
• HuffordLab / GenomeQC
  ☆35Updated 5 years ago
• nanoporetech / ont-assembly-polish
  ONT assembly and Illumina polishing pipeline
  ☆87Updated 5 years ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆49Updated 2 months ago
• ridgelab / JustOrthologs
  ☆34Updated 2 years ago
• veg / hyphy-analyses
  HyPhy standalone analyses
  ☆52Updated last month
• NBISweden / EMBLmyGFF3
  An efficient way to convert gff3 annotation files into EMBL format ready to submit.
  ☆66Updated 6 months ago