telatin / bamtocovLinks
🏔 coverage extraction from BAM/CRAM files, supporting targets 📊
☆65Updated last week
Alternatives and similar repositories for bamtocov
Users that are interested in bamtocov are comparing it to the libraries listed below
Sorting:
- A versatile toolkit for k-mers with taxonomic information☆81Updated 3 months ago
- A local-haplotagging-based small and structural variant caller☆89Updated 2 weeks ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 2 weeks ago
- Simple pileup-based variant caller☆94Updated 7 months ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆49Updated 2 weeks ago
- python plotly Circos from VCF☆40Updated last year
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆56Updated last year
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 10 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated 2 weeks ago
- perSVade: personalized Structural Variation detection☆40Updated 3 months ago
- ☆52Updated 2 months ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- ☆68Updated last month
- Toolkit for calling structural variants using short or long reads☆113Updated 2 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆115Updated 2 weeks ago
- k-mer learning materials☆80Updated 9 months ago
- Creating alignment plots from bam files☆69Updated 2 weeks ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 5 months ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆82Updated 2 weeks ago
- Visualize whole genome alignments as linear maps☆74Updated 4 months ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago