telatin / bamtocovLinks
🏔 coverage extraction from BAM/CRAM files, supporting targets 📊
☆65Updated last week
Alternatives and similar repositories for bamtocov
Users that are interested in bamtocov are comparing it to the libraries listed below
Sorting:
- A local-haplotagging-based small and structural variant caller☆94Updated 3 weeks ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 2 months ago
- ☆52Updated 4 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- python plotly Circos from VCF☆40Updated last year
- Simple pileup-based variant caller☆94Updated 9 months ago
- perSVade: personalized Structural Variation detection☆40Updated 3 weeks ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 5 years ago
- A versatile toolkit for k-mers with taxonomic information☆82Updated 5 months ago
- Visualize whole genome alignments as linear maps☆74Updated 3 weeks ago
- k-mer learning materials☆83Updated 11 months ago
- SRF: Satellite Repeat Finder☆101Updated 2 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆121Updated 2 months ago
- ☆29Updated 3 months ago
- Toolkit for calling structural variants using short or long reads☆115Updated 2 weeks ago
- Materials for Spring 2021 Applied Genomics Course☆54Updated 4 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆77Updated 4 years ago
- Set of tools to manipulate and visualize modified base bam files☆59Updated 3 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 7 months ago
- WDL workflows for variant calling and assembly using ONT☆38Updated this week
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- ☆27Updated 5 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆122Updated 4 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- ☆68Updated last week
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆106Updated this week