Alternatives and similar repositories for bamtocov:

Users that are interested in bamtocov are comparing it to the libraries listed below

• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆64Updated this week
• tseemann / samclip
  Filter SAM file for soft and hard clipped alignments
  ☆46Updated 10 months ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆73Updated this week
• epi2me-labs / modbam2bed
  ☆47Updated 7 months ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year
• PacificBiosciences / pb-human-wgs-workflow-snakemake
  DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
  ☆38Updated last year
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆88Updated last week
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆33Updated last week
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆39Updated last month
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆53Updated 2 years ago
• B-UMMI / long-read-catalog
  catalog for long-read sequencing tools
  ☆32Updated 2 years ago
• epi2me-labs / wf-alignment
  ☆27Updated last month
• shenwei356 / unikmer
  A versatile toolkit for k-mers with taxonomic information
  ☆77Updated 8 months ago
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆33Updated last year
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆101Updated this week
• bioinfo-chru-strasbourg / vcf2circos
  python plotly Circos from VCF
  ☆34Updated 9 months ago
• sirselim / guppy_parameter_optimiser
  A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
  ☆30Updated 2 years ago
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆53Updated 5 months ago
• RAHenriksen / NGSNGS
  NGSNGS: Next generation simulator for next generation sequencing data
  ☆50Updated 4 months ago
• EichlerLab / smrtsv2
  Structural variant caller
  ☆54Updated 3 years ago
• Psy-Fer / blue-crab
  crab go snap snap
  ☆38Updated 2 months ago
• harta55 / EnTAP
  EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP
  ☆39Updated 2 months ago
• kjenike / panagram
  ☆61Updated 3 weeks ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• nanoporetech / pinfish
  Tools to annotate genomes using long read transcriptomics data
  ☆45Updated 4 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 5 years ago
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆40Updated 5 months ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆48Updated 5 years ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆48Updated last month