telatin / bamtocovLinks
🏔 coverage extraction from BAM/CRAM files, supporting targets 📊
☆63Updated 2 years ago
Alternatives and similar repositories for bamtocov
Users that are interested in bamtocov are comparing it to the libraries listed below
Sorting:
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated 2 months ago
- A local-haplotagging-based small and structural variant caller☆78Updated 3 weeks ago
- Error correction of ONT transcript reads☆58Updated last year
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Simple pileup-based variant caller☆90Updated last month
- Toolkit for calling structural variants using short or long reads☆104Updated 2 weeks ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- perSVade: personalized Structural Variation detection☆39Updated 3 months ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated last month
- SRF: Satellite Repeat Finder☆96Updated last year
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- A versatile toolkit for k-mers with taxonomic information☆78Updated 10 months ago
- ☆48Updated 9 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆95Updated 3 months ago
- ☆29Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Filter SAM file for soft and hard clipped alignments☆49Updated last year
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- ☆28Updated 3 weeks ago
- Structural variant caller☆54Updated 3 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆54Updated last year
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- ☆80Updated 3 months ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.☆35Updated 3 weeks ago
- Creating alignment plots from bam files☆65Updated this week
- python plotly Circos from VCF☆36Updated 11 months ago
- WDL workflows for variant calling and assembly using ONT☆34Updated 2 weeks ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Call select base modifications in PacBio HiFi reads☆7Updated 4 months ago