telatin / bamtocovLinks
🏔 coverage extraction from BAM/CRAM files, supporting targets 📊
☆64Updated 3 months ago
Alternatives and similar repositories for bamtocov
Users that are interested in bamtocov are comparing it to the libraries listed below
Sorting:
- A local-haplotagging-based small and structural variant caller☆85Updated this week
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 3 months ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆45Updated 2 weeks ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- python plotly Circos from VCF☆39Updated last year
- A versatile toolkit for k-mers with taxonomic information☆79Updated last month
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated last week
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 10 months ago
- k-mer learning materials☆80Updated 7 months ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- ☆24Updated 3 weeks ago
- Toolkit for calling structural variants using short or long reads☆109Updated last week
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆53Updated last year
- Simple pileup-based variant caller☆92Updated 5 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 7 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- WDL workflows for variant calling and assembly using ONT☆36Updated this week
- ☆66Updated last month
- Creating alignment plots from bam files☆65Updated last week
- Compute N50/NG50 and auN/auNG☆32Updated 2 years ago
- Structural variant caller☆55Updated 3 years ago
- ☆49Updated last week
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆26Updated 3 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- Visualize whole genome alignments as linear maps☆73Updated 2 months ago
- Tools to annotate genomes using long read transcriptomics data☆46Updated 4 years ago