telatin / bamtocov
🏔 coverage extraction from BAM/CRAM files, supporting targets 📊
☆60Updated 2 years ago
Alternatives and similar repositories for bamtocov:
Users that are interested in bamtocov are comparing it to the libraries listed below
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated 2 weeks ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆73Updated this week
- Error correction of ONT transcript reads☆59Updated last year
- Simple pileup-based variant caller☆87Updated last week
- ☆76Updated this week
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Compute N50/NG50 and auN/auNG☆31Updated last year
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- python plotly Circos from VCF☆31Updated 8 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆40Updated 4 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆71Updated 3 years ago
- ☆76Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Set of tools to manipulate and visualize modified base bam files☆50Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Structural variant caller☆54Updated 3 years ago
- SRF: Satellite Repeat Finder☆91Updated last year
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆99Updated 3 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆48Updated 5 months ago
- ☆29Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- ☆61Updated last week
- perSVade: personalized Structural Variation detection☆38Updated this week
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Filter SAM file for soft and hard clipped alignments☆47Updated 9 months ago
- Segmental Duplication Assembler (SDA).☆44Updated last year
- A tool for evaluate long-read de novo assembly results☆43Updated 6 months ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 2 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated 2 months ago