jmkidd / dogmap
pipeline for dog WGS alignment
☆12Updated last year
Related projects ⓘ
Alternatives and complementary repositories for dogmap
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆66Updated 2 months ago
- Somatic structural variant caller for long-read data☆50Updated this week
- ☆36Updated 7 months ago
- FEELnc : FlExible Extraction of LncRNA☆82Updated 2 months ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆24Updated 3 months ago
- ENCODE long read RNA-seq pipeline☆44Updated last year
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆102Updated 4 months ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆53Updated last year
- Tip and tricks for BAM files☆84Updated 6 years ago
- ☆48Updated 3 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆93Updated 10 months ago
- Structural Variant Index☆70Updated this week
- ☆105Updated this week
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆75Updated 2 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆106Updated this week
- Same species annotation lift over pipeline.☆96Updated last year
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆67Updated 9 months ago
- BAM Statistics, Feature Counting and Annotation☆145Updated 3 weeks ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆64Updated 5 years ago
- QDNAseq package for Bioconductor☆49Updated 3 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆102Updated 4 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆108Updated 2 months ago
- ☆34Updated last week
- A tool for profiling long STRs from short reads☆88Updated 3 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆77Updated 9 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆101Updated 3 years ago
- ☆78Updated 10 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆50Updated 4 years ago