sirselim / guppy_parameter_optimiserLinks
A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
☆30Updated 3 years ago
Alternatives and similar repositories for guppy_parameter_optimiser
Users that are interested in guppy_parameter_optimiser are comparing it to the libraries listed below
Sorting:
- CRyPTIC data processing pipelines☆34Updated last year
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 5 years ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆21Updated 2 years ago
- ☆30Updated last year
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆26Updated 3 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- A local-haplotagging-based small and structural variant caller☆89Updated 2 weeks ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated 2 weeks ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 2 weeks ago
- k-mer learning materials☆80Updated 9 months ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- Simple pileup-based variant caller☆94Updated 7 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆56Updated last year
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- Error correction of ONT transcript reads☆58Updated 2 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- ☆68Updated last month
- GUI for inspecting POD5 files☆34Updated 11 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 9 months ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Pan-Genomic Matching Statistics☆54Updated last year
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆41Updated last week
- ☆30Updated last year
- A battery of methylation tools for PacBio HiFi reads☆44Updated last week
- A versatile toolkit for k-mers with taxonomic information☆81Updated 3 months ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago