cihga39871 / Atria
An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.
☆33Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for Atria
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 3 years ago
- This repository hosts a large collection of Nextflow snippets☆57Updated 5 months ago
- A versatile toolkit for k-mers with taxonomic information☆76Updated 3 months ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆31Updated 2 years ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆17Updated last year
- perSVade: personalized Structural Variation detection☆36Updated 4 months ago
- ☆47Updated 2 months ago
- Visualize whole genome alignments as linear maps☆70Updated last month
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- ☆33Updated 3 weeks ago
- Pan-Genomic Matching Statistics☆48Updated 7 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆29Updated 8 months ago
- Simple pileup-based variant caller☆81Updated 7 months ago
- Error correction of ONT transcript reads☆58Updated last year
- MarginPolish: Graph based assembly polishing☆45Updated 3 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆52Updated last year
- catalog for long-read sequencing tools☆32Updated last year
- Filter SAM file for soft and hard clipped alignments☆46Updated 5 months ago
- De novo clustering of long transcript reads into genes☆48Updated 3 years ago
- Generate unique KMERs for every contig in a FASTA file☆43Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆56Updated last month
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 3 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 3 weeks ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 3 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆48Updated 5 months ago
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago