cihga39871 / AtriaLinks
An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.
☆38Updated last month
Alternatives and similar repositories for Atria
Users that are interested in Atria are comparing it to the libraries listed below
Sorting:
- A versatile toolkit for k-mers with taxonomic information☆80Updated 2 months ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆103Updated 3 months ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆41Updated 3 months ago
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆64Updated 3 weeks ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 5 months ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated 2 years ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆44Updated 3 months ago
- ☆46Updated last month
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 4 months ago
- orthology assignment using phylogenetic and network analyses☆49Updated last month
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- perSVade: personalized Structural Variation detection☆40Updated 2 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Tools and software library developed by the ONT Applications group☆64Updated 4 years ago
- ☆51Updated last month
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆59Updated last year
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 2 months ago
- This repository hosts a large collection of Nextflow snippets☆56Updated 9 months ago
- seqfu - Sequece Fastx Utilities☆122Updated last month
- A local-haplotagging-based small and structural variant caller☆89Updated last week
- vcfdist: Accurately benchmarking phased variant calls☆84Updated 2 months ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆48Updated 3 weeks ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last year
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago