Alternatives and similar repositories for entrez

Users that are interested in entrez are comparing it to the libraries listed below

• dvklopfenstein / ReactomePy
  Explore biomolecular pathways in Reactome from the command-line or a Python script
  ☆24Updated 7 months ago
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆40Updated 8 years ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆67Updated 3 years ago
• Edinburgh-Genome-Foundry / genome_collector
  Easily download genomes and build BLAST/Bowtie indexes in Python
  ☆21Updated 2 years ago
• openvax / pepdata
  Python interface to amino acid properties and IEDB
  ☆56Updated 8 months ago
• ginkgobioworks / edge
  Efficiently keep track of changes to genomes
  ☆38Updated 10 months ago
• ebi-uniprot / ProtVista
  A BioJS viewer for protein sequence features
  ☆49Updated 2 years ago
• lwgray / pyEntrezId
  Converts Ensembl, Uniprot, and HGNC IDs to Entrez Gene Id
  ☆45Updated last year
• KosuriLab / DropSynth
  Scripts to design DropSynth oligos
  ☆16Updated 4 years ago
• PriceLab / probannopy
  A python package for Probanno!
  ☆9Updated 4 years ago
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆84Updated 11 months ago
• keoughkath / AlleleAnalyzer
  A software tool for personalized and allele-specific CRISPR editing.
  ☆17Updated 3 years ago
• mengqvist / DNApy
  Code for DNA plasmid editing.
  ☆43Updated 6 years ago
• Edinburgh-Genome-Foundry / Geneblocks
  Find common blocks and differences between DNA sequences
  ☆42Updated 2 months ago
• biosustain / goodbye-genbank
  A Python package for Biopython that gives feature annotations from GenBank records a new and better life
  ☆14Updated 9 years ago
• iseekwonderful / PyPathway
  A python package for pathway visualization
  ☆38Updated 4 years ago
• audy / bioinformatics-hacks
  Scripts for miscelleneous bioinformatics tasks
  ☆48Updated 5 years ago
• Edinburgh-Genome-Foundry / Plateo
  🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more
  ☆44Updated last week
• Edinburgh-Genome-Foundry / Caravagene
  🎨 Python library to plot multi-part genetic constructs
  ☆25Updated last month
• Edinburgh-Genome-Foundry / SBOL-Visual-CSS
  Draw genetic elements with HTML & CSS
  ☆16Updated 8 years ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated 2 weeks ago
• mentatpsi / KEGG-Crawler
  A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.
  ☆20Updated last year
• Edinburgh-Genome-Foundry / python_codon_tables
  Codon usage tables in code-friendly format + Python bindings
  ☆37Updated 3 weeks ago
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated 10 months ago
• apierleoni / BioGraPy
  Biological Graphic tool in Python
  ☆34Updated 5 years ago
• MG-RAST / pipeline
  The MG-RAST pipeline
  ☆23Updated 2 years ago
• petercim / ClusterFinder
  Predicting biosynthetic gene clusters in genomes
  ☆36Updated 11 years ago
• bio-tools / biotoolsRegistry
  biotoolsregistry : discovery portal for bioinformatics
  ☆77Updated 2 weeks ago
• PacificBiosciences / pbcore
  A Python library for reading and writing PacBio® data files
  ☆39Updated 3 months ago
• FredHutch / maxquant-pipeline
  MaxQuant Automated Pipeline
  ☆22Updated 4 years ago