jordibc / entrezLinks
A simple Python interface to the NCBI databases (Entrez).
☆23Updated 11 months ago
Alternatives and similar repositories for entrez
Users that are interested in entrez are comparing it to the libraries listed below
Sorting:
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 3 years ago
- simplified searching, fetching, and parsing records from NCBI using their E-utilities interface☆63Updated last month
- Converts Ensembl, Uniprot, and HGNC IDs to Entrez Gene Id☆46Updated 2 years ago
- Explore biomolecular pathways in Reactome from the command-line or a Python script☆24Updated 11 months ago
- Python interface to amino acid properties and IEDB☆57Updated last year
- Code for the CRISPOR article, all data and code to create figures and analysis☆44Updated 9 years ago
- Library for manipulating genomic variants and predicting their effects☆85Updated last year
- A BioJS viewer for protein sequence features☆51Updated 2 years ago
- Efficiently keep track of changes to genomes☆38Updated last year
- Python-based framework for computational immunomics☆40Updated 4 years ago
- A Python wrapper around Clustal Omega (http://www.clustal.org/omega/)☆25Updated 3 years ago
- An RNA manipulation library.☆56Updated last year
- 🎨 Python library to plot multi-part genetic constructs☆25Updated 6 months ago
- ☆107Updated 7 years ago
- A python wrapper for the benchling api☆50Updated 5 years ago
- A python library for creating simulated regulatory DNA sequences☆39Updated 2 years ago
- A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence☆107Updated last week
- ☆91Updated 6 years ago
- deep residual neural network for classifying the pathogenicity of missense mutations.☆115Updated 4 years ago
- Synthego ICE - Inference of CRISPR Editing software☆68Updated last year
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆26Updated 8 years ago
- 🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more☆45Updated 4 months ago
- Python interface to running command-line and web-based MHC binding predictors☆98Updated last year
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 2 months ago
- General low-level API☆50Updated 3 years ago
- A python package for pathway visualization☆38Updated 4 years ago
- Library to visualize protein sequence features in javascript using D3 - From SIB CALIPHO group; neXtProt project☆118Updated last year
- Codon usage tables in code-friendly format + Python bindings☆39Updated 5 months ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆31Updated 8 years ago
- Downloader for ENCODE☆32Updated 5 years ago