Implementation of the EM algorithm for the detection of shifts in a phylogeny.
☆19Sep 24, 2025Updated last year
Alternatives and similar repositories for PhylogeneticEM
Users that are interested in PhylogeneticEM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆35Mar 5, 2026Updated 7 months ago
- Phylogenetic Comparative Tools for Missing Data and Within-Species Variation☆34Jul 21, 2026Updated 2 months ago
- ☆25Feb 11, 2026Updated 8 months ago
- Detection of evolutionary shifts in Ornstein-Uhlenbeck models☆19Aug 5, 2022Updated 4 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆13Feb 3, 2026Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- phylogenetic comparative method☆11Jan 9, 2026Updated 9 months ago
- ☆14Aug 13, 2026Updated 2 months ago
- A suite of methods and models for studying evolutionary radiations☆26Aug 31, 2026Updated last month
- ☆15Aug 28, 2014Updated 12 years ago
- PhyloNetworks: a julia package with utilities for phylogenetic networks☆175Oct 1, 2026Updated last week
- Functions for phylogenetic analyses☆36May 18, 2026Updated 4 months ago
- Workflow to detect and phase hybrids in target capture data☆20Aug 27, 2026Updated last month
- Phylogenetic ANalyses of DiversificAtion (in Julia)☆12Jul 13, 2024Updated 2 years ago
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Sep 27, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Performs MCMCglmm on multiple phylogenetic trees☆11Apr 17, 2025Updated last year
- Scalable relaxed clock phylogenetic dating☆29Jul 5, 2026Updated 3 months ago
- A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop☆15Jul 30, 2020Updated 6 years ago
- mvMORPH: an R package for fitting multivariate evolutionary models to morphometric data☆20Oct 1, 2026Updated last week
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Sep 15, 2026Updated last month
- ☆13Aug 4, 2026Updated 2 months ago
- ☆15Jun 6, 2023Updated 3 years ago
- A program for multimodel inference on speciation and trait evolution☆36Sep 4, 2017Updated 9 years ago
- comprehensive dated seed plants made with genbank and opentree☆20May 10, 2018Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- R Interfaces to Phylogenetic Software☆12Jun 25, 2026Updated 3 months ago
- Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis☆16Jul 25, 2025Updated last year
- ☆21Dec 5, 2020Updated 5 years ago
- ☆68Oct 17, 2023Updated 2 years ago
- Bayesian sparse regression with regularized shrinkage and conjugate gradient acceleration☆21Sep 13, 2026Updated last month
- ☆16Jun 22, 2026Updated 3 months ago
- ☆27Apr 14, 2021Updated 5 years ago
- BLAST-like algorithm for R based on the nsearch library (https://github.com/stevschmid/nsearch)☆15Apr 24, 2026Updated 5 months ago
- Helper scripts for processing and visualization of phylogenetics datasets☆32Feb 19, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Bayesian estimation of the evolutionary rate matrix.☆10Dec 8, 2025Updated 10 months ago
- An R package for the calculation of taxonomic, phenotypic and phylogenetic metrics across grid cells.☆16Aug 20, 2025Updated last year
- Automorphism groups for CSets - generalizing the nauty algorithm to a broad class of data structures☆13Oct 30, 2023Updated 2 years ago
- Biogeographic regionalization and spatial conservation☆20Jul 14, 2025Updated last year
- R package containing datelife's core functionality☆15Sep 6, 2026Updated last month
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated 2 years ago
- instructor notes from Software Carpentry workshops☆10Jan 25, 2019Updated 7 years ago