khabbazian / l1ouView external linksLinks
Detection of evolutionary shifts in Ornstein-Uhlenbeck models
☆19Aug 5, 2022Updated 3 years ago
Alternatives and similar repositories for l1ou
Users that are interested in l1ou are comparing it to the libraries listed below
Sorting:
- Implementation of the EM algorithm for the detection of shifts in a phylogeny.☆19Sep 24, 2025Updated 4 months ago
- Bayesian species delimitation integrating genes and traits☆12Aug 17, 2021Updated 4 years ago
- RNA-seq data amalgamation for a large-scale evolutionary transcriptomics☆12Updated this week
- Newick tree processing☆13Updated this week
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated 2 weeks ago
- mPTP - a tool for single-locus species delimitation☆30Sep 19, 2023Updated 2 years ago
- Convergent substitution detection tool based on the PCOC model☆31Dec 2, 2021Updated 4 years ago
- A birth-death-hybridization based phylogenetic network simulator.☆11Oct 2, 2024Updated last year
- Performs MCMCglmm on multiple phylogenetic trees☆12Apr 17, 2025Updated 10 months ago
- An R function to compute Concordance Factors from SNP datasets☆15Dec 4, 2025Updated 2 months ago
- Simulation package for getting gene tree distributions and loci / SNPs from input tree topologies and migration / Ne scenarios. Wraps aro…☆14Apr 20, 2024Updated last year
- ☆36Nov 3, 2024Updated last year
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Oct 21, 2021Updated 4 years ago
- Possvm: find clusters of orthologs in phylogenies using species overlap & MCL☆16Jul 19, 2024Updated last year
- Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses☆16May 27, 2025Updated 8 months ago
- Welcome to the offical webpage for the R-package ‘humboldt’☆17Oct 28, 2025Updated 3 months ago
- Phylogenetic Comparative Tools for Missing Data and Within-Species Variation☆32Jan 15, 2023Updated 3 years ago
- R package to perform sensitivity analysis for comparative methods☆14Jun 10, 2020Updated 5 years ago
- Workflow to detect and phase hybrids in target capture data☆20Mar 9, 2023Updated 2 years ago
- Molecular convergence detection☆46Feb 10, 2026Updated last week
- Phylogenetic Network Inference without ILS☆19Jul 31, 2022Updated 3 years ago
- ☆21Dec 30, 2025Updated last month
- Rapid, interactive, probabilistic analysis of convergent molecular evolution☆16Updated this week
- Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis☆17Jul 25, 2025Updated 6 months ago
- R package for analysis of hybrids and hybrid zones☆21Dec 30, 2023Updated 2 years ago
- ☆44Sep 5, 2023Updated 2 years ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆23Nov 21, 2023Updated 2 years ago
- diversitree: comparative phylogenetic analyses of diversification☆33Oct 2, 2024Updated last year
- A book for teaching people how to do comparative methods in R☆22Jul 28, 2023Updated 2 years ago
- ☆23Updated this week
- ☆21Sep 12, 2019Updated 6 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Nov 29, 2022Updated 3 years ago
- A Julia package for estimating phylogenetic networks from genomic data☆20Jun 3, 2024Updated last year
- Analysis of convergence between organismal traits and DNA/protein sequences☆62Jan 6, 2026Updated last month
- de novo targeted gene assembly☆22Apr 16, 2021Updated 4 years ago
- ☆14Updated this week
- PhyloNetworks: a julia package with utilities for phylogenetic networks☆171Dec 10, 2025Updated 2 months ago
- Fast metagenome analysis toolkit☆27Sep 3, 2024Updated last year
- A phylogeny dating method using least-squares algorithms and criteria☆32Oct 25, 2024Updated last year