A server implementation of the htsget protocol for bioinformatics in Rust
☆50Aug 3, 2026Updated last week
Alternatives and similar repositories for htsget-rs
Users that are interested in htsget-rs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆27Jun 25, 2026Updated last month
- sfasta☆35Feb 25, 2026Updated 5 months ago
- Beacon v2 Reference Implementation (API)☆17Dec 13, 2024Updated last year
- Reference server implementation for the GA4GH HTSget API standard.☆12Apr 8, 2026Updated 4 months ago
- Fast API server for calculating linkage disequilibrium☆20Apr 24, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- DuckDB Extension for working with bioinformatic data.☆19Oct 18, 2023Updated 2 years ago
- A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.☆56Jun 25, 2026Updated last month
- A Swiss army knife for genome projects☆15Aug 13, 2013Updated 12 years ago
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Aug 4, 2026Updated last week
- Convert vcf in parquet☆32Jan 23, 2025Updated last year
- Read CRAM v3 and v2 in node or in the browser☆18Updated this week
- Distributed and cloud computing framework for vg☆23Apr 21, 2026Updated 3 months ago
- Copy Number Methods for Detection and Genome Wide Association Tests☆23Nov 4, 2024Updated last year
- Compare assembly graph file formats☆16Jul 23, 2015Updated 11 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Command line utility for working with next-generation sequencing files.☆39Jun 24, 2025Updated last year
- A rust implementation of STAR☆70Updated this week
- Test sets and pipeline scripts for pan-genomic graph analysis☆18Jan 30, 2025Updated last year
- Exon is an OLAP query engine specifically for biology and life science applications.☆71Mar 26, 2025Updated last year
- bioinformatics toolkit in rust☆107Jul 16, 2026Updated 3 weeks ago
- A mosaic genome painting tool for plant genomes☆18May 6, 2026Updated 3 months ago
- RRSelection: A linkage disequilibrium method to detect selection region across population VCF☆14Feb 11, 2019Updated 7 years ago
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆370Jul 20, 2026Updated 3 weeks ago
- Bioinformatics I/O libraries in Rust☆715Aug 3, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆13Mar 31, 2021Updated 5 years ago
- This repo is deprecated. Please use gfatools instead.☆15Aug 17, 2018Updated 7 years ago
- gia: Genomic Interval Arithmetic☆67Aug 21, 2024Updated last year
- Genome assembly soft-masking using Red (REpeat Detector)☆18Dec 7, 2018Updated 7 years ago
- Docker containers for bioinformatics with a small footprint☆23May 25, 2026Updated 2 months ago
- Work with bioinformatic files using Arrow, Polars, and/or DuckDB☆196Mar 10, 2025Updated last year
- IPython Magic Functions☆16Aug 14, 2017Updated 8 years ago
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- Rust SSH-to-{UART, CAN, I2C} bridge☆19Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- CViTjs - Chromosome Viewing Tool. A javascript tool for quick whole-genome views of data.☆11Jan 15, 2021Updated 5 years ago
- Tools for munging genomic data☆21Jul 9, 2019Updated 7 years ago
- Per-base per-nucleotide depth analysis☆151May 9, 2026Updated 3 months ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- Cookiecutter for snakemake slurm profile☆16Jul 22, 2023Updated 3 years ago
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated last year
- A Rust implementation of sliding window stats over fastas.☆15Jun 4, 2026Updated 2 months ago