umccr / htsget-rs
A server implementation of the htsget protocol for bioinformatics in Rust
☆40Updated last week
Alternatives and similar repositories for htsget-rs:
Users that are interested in htsget-rs are comparing it to the libraries listed below
- Alignment-based gene expression quantification☆27Updated 7 months ago
- Rust utility code☆32Updated 11 months ago
- A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).☆38Updated this week
- bgzip support for Rust☆16Updated last year
- Rust implmentation of VCF parser☆22Updated 2 years ago
- A library of common biomedical types.☆37Updated 2 months ago
- ☆50Updated 2 years ago
- A port of biocommons/hgvs to the Rust programming language☆11Updated last week
- FASTA and FASTQ parsing in Rust☆73Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated 6 months ago
- Single-Cell RNA-seq pseudo-aligner☆51Updated 8 months ago
- Fasten toolkit, for streaming operations on fastq files☆77Updated this week
- Rust crates for working with Workflow Description Language (WDL) documents.☆32Updated this week
- Efficient querying of biological databases☆33Updated last month
- Rust bindings to minimap2 library☆87Updated last week
- ☆57Updated 2 years ago
- Command line utility for working with next-generation sequencing files.☆33Updated 2 months ago
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆116Updated 4 years ago
- ☆11Updated 2 years ago
- Bit packed and well-typed biological sequences☆26Updated last week
- Convert vcf in parquet☆24Updated last month
- Simple and transparent support for compressed files.☆76Updated 7 months ago
- Command line utility for manipulating Illumina-generated FASTQ files.☆78Updated last month
- Rust wrapper for STAR aligner☆15Updated this week
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆13Updated last month
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆30Updated this week
- A genomic minhashing implementation in Rust☆93Updated last year
- Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.☆122Updated this week
- Bioinformatics Algorithms implemented in Rust for Learners☆30Updated 3 years ago
- De Bruijn graphs in Rust☆65Updated 5 months ago