stjude-rust-labs / sprocketLinks
A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).
☆78Updated last week
Alternatives and similar repositories for sprocket
Users that are interested in sprocket are comparing it to the libraries listed below
Sorting:
- Rust crates for working with Workflow Description Language (WDL) documents.☆55Updated last week
- bioinformatics toolkit in rust☆90Updated last month
- bedtools-like functionality for interval sets in rust☆52Updated 10 months ago
- Fasten toolkit, for streaming operations on fastq files☆79Updated 3 months ago
- A quality control tool for FASTQ files written in rust☆50Updated last month
- Command line utility for working with next-generation sequencing files.☆35Updated 3 weeks ago
- A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.☆39Updated last month
- Convert vcf in parquet☆27Updated 5 months ago
- an API for intersections of genomic data☆75Updated 3 weeks ago
- A Rust library and command line tool for working with genomic ranges and their data.☆101Updated last year
- expressions on VCFs☆85Updated 2 months ago
- sfasta☆35Updated 2 months ago
- Bit-packed and well-typed biological sequences☆35Updated 2 months ago
- A high efficiency binary format for sequencing data☆63Updated 2 weeks ago
- Blazing-Fast Bioinformatic Operations on Python DataFrames☆69Updated last week
- Rust bindings to minimap2 library☆101Updated 2 weeks ago
- Grep for FASTQ files☆98Updated 3 months ago
- FASTA and FASTQ parsing in Rust☆79Updated 4 months ago
- A high-performance BigWig and BigBed library in Rust☆100Updated last month
- gia: Genomic Interval Arithmetic☆65Updated 10 months ago
- Single-Cell RNA-seq pseudo-aligner☆51Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated last year
- Command line utility for manipulating Illumina-generated FASTQ files.☆87Updated 4 months ago
- Fast FASTQ sample demultiplexing in Rust.☆63Updated last month
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆132Updated 5 months ago
- Fast (host) DNA sequence filtering☆66Updated last week
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆51Updated last month
- Per-base per-nucleotide depth analysis☆134Updated 2 weeks ago
- The D4 Quantitative Data Format☆166Updated 2 months ago
- Alignment-based gene expression quantification☆29Updated 3 months ago