stjude-rust-labs / sprocket

Related projects ⓘ

Alternatives and complementary repositories for sprocket

• stjude-rust-labs / wdl
  Rust crates for working with Workflow Description Language (WDL) documents.
  ☆26Updated this week
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆67Updated this week
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆34Updated last week
• natir / vcf2parquet
  Convert vcf in parquet
  ☆22Updated 4 months ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆44Updated 3 months ago
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆71Updated last week
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆57Updated 3 months ago
• 10XGenomics / rust-bwa
  Rust wrapper of the BWA C API
  ☆18Updated 3 years ago
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆74Updated this week
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆51Updated 3 months ago
• jguhlin / sfasta
  sfasta
  ☆34Updated 3 months ago
• brentp / vcfexpress
  expressions on VCFs
  ☆61Updated last month
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆16Updated this week
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated 4 months ago
• brentp / vcf-bench
  evaluating vcf parsing libraries
  ☆16Updated 2 years ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆26Updated 5 months ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆94Updated 5 months ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆26Updated 4 months ago
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆56Updated this week
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆78Updated 6 months ago
• natir / biotest
  Generate random test data for bioinformatics
  ☆25Updated 5 months ago
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆57Updated last month
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆76Updated 9 months ago
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆93Updated last month
• sstadick / bam-builder
  Wrapper over rust-htslib for building collections of BAM records for testing.
  ☆11Updated last year
• fastqc-rs / fastqc-rs
  A quality control tool for FASTQ files written in rust
  ☆38Updated 3 months ago
• kcleal / superintervals
  Fast interval intersection library
  ☆22Updated this week
• stjude-rust-labs / fq
  Command line utility for manipulating Illumina-generated FASTQ files.
  ☆77Updated this week
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated 3 months ago
• sstadick / perbase
  Per-base per-nucleotide depth analysis
  ☆119Updated 3 months ago