A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).
☆152Apr 14, 2026Updated this week
Alternatives and similar repositories for sprocket
Users that are interested in sprocket are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rust crates for working with Workflow Description Language (WDL) documents.☆62Sep 23, 2025Updated 6 months ago
- A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.☆51Apr 8, 2026Updated last week
- A crate for working with the Task Execution Service (TES) specification.☆13Jan 8, 2026Updated 3 months ago
- Foundations for the Rust omics ecosystem.☆16Mar 19, 2026Updated 3 weeks ago
- A crate for working with genomics chain files.☆15Mar 19, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Command line utility for working with next-generation sequencing files.☆38Jun 24, 2025Updated 9 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Apr 24, 2025Updated 11 months ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- Bitpacked sequence trait and implementation☆16Feb 27, 2026Updated last month
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Dec 3, 2025Updated 4 months ago
- Convert vcf in parquet☆31Jan 23, 2025Updated last year
- Remove human reads from a sequencing run☆48Updated this week
- ☆12Apr 18, 2022Updated 4 years ago
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast interval intersection library☆44Aug 20, 2025Updated 7 months ago
- FUSE filesystem for the DNAnexus storage system☆13Mar 17, 2026Updated last month
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆43Updated this week
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆27Apr 11, 2026Updated last week
- Host depletion optimised for clinical metagenomic sequencing applications☆17Nov 18, 2024Updated last year
- Rust in bioinformatics and computational biology☆19Oct 22, 2022Updated 3 years ago
- µbinfie blog☆19Jul 21, 2025Updated 8 months ago
- A small, auxiliary index to massively improve parallel fastq parsing☆31Mar 6, 2026Updated last month
- Command line utility for manipulating FASTQ files☆94Mar 24, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated 8 months ago
- Randomly subsample sequencing reads or alignments☆259Apr 1, 2026Updated 2 weeks ago
- bioinformatics toolkit in rust☆103Feb 15, 2026Updated 2 months ago
- Iterate over minimizers of a DNA sequence☆32Jul 12, 2024Updated last year
- k-mers and the like☆22Apr 6, 2026Updated last week
- Bioinformatics I/O libraries in Rust☆676Apr 11, 2026Updated last week
- expressions on VCFs☆91Mar 17, 2026Updated last month
- A flexible processor for sequencing reads☆26Mar 25, 2026Updated 3 weeks ago
- ☆11Dec 24, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.☆447Mar 27, 2026Updated 3 weeks ago
- Forensic analysis tool useful in backwards computing information from next-generation sequencing data.☆11Jan 20, 2026Updated 2 months ago
- Create WDL documentation using Markdown.☆29Nov 25, 2025Updated 4 months ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 5 months ago
- Simple and transparent support for compressed files.☆81Feb 27, 2026Updated last month
- ntHash implementation in Rust☆36Jul 12, 2024Updated last year
- Per-base per-nucleotide depth analysis☆149Mar 16, 2026Updated last month