sstadick / rust-lapperLinks
Rust implementation of a fast, easy, interval tree library nim-lapper
☆62Updated 2 months ago
Alternatives and similar repositories for rust-lapper
Users that are interested in rust-lapper are comparing it to the libraries listed below
Sorting:
- Simple and transparent support for compressed files.☆80Updated 7 months ago
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆128Updated 4 years ago
- A very fast interval tree data structure☆125Updated 7 months ago
- Rust edit distance routines accelerated using SIMD. Supports fast Hamming, Levenshtein, restricted Damerau-Levenshtein, etc. distance cal…☆108Updated 2 years ago
- Fast and scalable minimal perfect hashing for massive key sets☆142Updated last year
- ☆21Updated last year
- PtrHash minimal perfect hash function☆70Updated 2 weeks ago
- Multi-threaded Compression☆164Updated 4 months ago
- Simple succinct data structures (in Rust)☆50Updated 9 months ago
- Rust utility code☆32Updated last year
- ☆50Updated 2 years ago
- Integer sets as fast, sorted, integer ranges with full set operations☆94Updated last month
- Rust bindings to parasail, a SIMD-accelerated pairwise sequence alignment library.☆21Updated 9 years ago
- A library for easy, fast, and efficient reading & writing of PLINK Bed files☆81Updated 5 months ago
- FASTA and FASTQ parsing in Rust☆78Updated 6 months ago
- Out-of-memory sorting of large datasets map / reduce style processing☆46Updated last week
- Rust bindings to minimap2 library☆101Updated last week
- ☆14Updated last year
- ☆11Updated 3 years ago
- Parallel Construction of Suffix Arrays in Rust☆26Updated 4 months ago
- Parallelized zip archive reading☆37Updated 8 months ago
- A genomic minhashing implementation in Rust☆98Updated 3 months ago
- Alignment-based gene expression quantification☆28Updated 3 weeks ago
- Parallel Barnes-Hut t-SNE implementation written in Rust.☆87Updated 2 months ago
- ☆22Updated 3 years ago
- Rust implementations of succinct data structures☆59Updated last week
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Updated 2 years ago
- Fast FASTX parsing and k-mer methods in Rust☆195Updated last month
- Fast approximate string searching☆54Updated 2 weeks ago
- A server implementation of the htsget protocol for bioinformatics in Rust☆45Updated this week