dattalab / d_codeLinks
2Photon Imaging and Electrophysiology Analysis code for the Datta Lab @ HMS
☆14Updated 9 years ago
Alternatives and similar repositories for d_code
Users that are interested in d_code are comparing it to the libraries listed below
Sorting:
- Deconvolution of calcium imaging data☆96Updated 5 months ago
- Blazing fast calcium imaging analysis toolbox☆22Updated 8 years ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Updated last year
- A toolbox for inferring spikes from calcium traces.☆23Updated 2 years ago
- Python package for analysis of dynamic fluorescence microscopy data☆100Updated 6 years ago
- Pytorch implementation of LocaNMF☆36Updated 5 years ago
- MountainLab is data processing, sharing and visualization software for scientists. It is built around MountainSort, spike sorting softwar…☆44Updated 6 years ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 6 years ago
- motion correction☆17Updated 2 years ago
- Python tools for analysis of neurophysiology data☆37Updated last year
- Control and design of two-photon photostimulation experiments☆16Updated last year
- a Python machine learning library for neurophysiology data☆36Updated 6 years ago
- A Graphical User Interface with 3D Visualization features for NEURON simulation enviroment☆30Updated 2 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆30Updated 5 years ago
- An interactive image processing program for biologists written in Python.☆23Updated 2 months ago
- Generate a matrix of predictors corresponding to different behavioral variables and process a regression-based encoding model to obtain t…☆18Updated 5 years ago
- Database for experimental neuroscience laboratories☆48Updated last week
- Detect synchronous and overlapped spikes in extracellular recordings using Binary Pursuit (Pillow et al 2013)☆12Updated 10 years ago
- Preprint classes for biological journals☆30Updated 4 years ago
- ☆38Updated 3 years ago
- Tools for spike data analysis and visualization☆106Updated 2 years ago
- A program for viewing and analyzing electrophysiological data☆57Updated last month
- Neuropixels case for chronic recordings in freely moving mice.☆18Updated 5 years ago
- 3-D imaging visualisation through slicing☆30Updated 5 months ago
- Dimensionality reduction of calcium-imaged neuronal population activity☆14Updated 2 years ago
- spike sorting software☆25Updated 6 years ago
- YASS: Yet Another Spike Sorter☆67Updated 2 years ago
- Spike sorting software being developed at Flatiron Institute, based on JRCLUST (Janelia Rocket Cluster)☆28Updated 3 years ago
- Match suite2p ROIs between imaging sessions☆25Updated 6 years ago
- The code takes as an input a time series vector of calcium observationsand produces samples from the posterior distribution of the underl…☆20Updated 8 years ago