De novo genome assembly for long reads using an overlap graph
☆26Oct 27, 2026Updated this week
Alternatives and similar repositories for Ilesta
Users that are interested in Ilesta are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- k-mers and the like☆22Oct 18, 2026Updated last week
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated last year
- Genome size estimation from long read overlaps☆98Sep 8, 2026Updated last month
- 🐪Classification through yAML Heuristic Mapping Protocol 🐪☆10Jun 16, 2026Updated 4 months ago
- Genome browser 🧬👀🚀☆35Aug 24, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- 🛠️🧬 A Software Framework to Manipulate Assembly Graphs☆22Oct 15, 2026Updated 2 weeks ago
- Basecalling configuration prediction from FASTQ files☆34Mar 17, 2026Updated 7 months ago
- An extensible and performant aligner and read mapper☆107Oct 14, 2026Updated 2 weeks ago
- ☆39Oct 22, 2026Updated last week
- A high-resolution long-read metagenome assembler for even noisy reads. Myloasm assembles strain-resolved, circular + complete genomes fro…☆176Oct 11, 2026Updated 2 weeks ago
- Remove human reads from a sequencing run☆53Jun 29, 2026Updated 4 months ago
- Homology-based ANI estimation at unprecedented scales🦀☆25Oct 4, 2026Updated 3 weeks ago
- A rapid, accurate and flexible (core-genome) multi-locus sequence typing (MLST) allele caller.☆34Oct 14, 2026Updated 2 weeks ago
- How many distinct k-mers are there in a sequence?☆11Feb 4, 2026Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆25Sep 22, 2026Updated last month
- plane sweep filtering genome alignments☆24Sep 28, 2026Updated last month
- Exact, SIMD-accelerated sequence alignment (Smith-Waterman, Needleman-Wunsch, semi-global, overlap)☆12Aug 10, 2026Updated 2 months ago
- Graph-based assembly phasing☆102Nov 25, 2025Updated 11 months ago
- Split k-mer analysis – version 2☆109Oct 20, 2026Updated last week
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆57Sep 28, 2026Updated last month
- PAQman is a tool for a reference-free and comprehensive evaluation of genome assemblies☆10Sep 5, 2026Updated last month
- A SIMD-accelerated library to compute random minimizers☆49Updated this week
- Rapid estimation of phylogenetic trees using sketching☆13Feb 18, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 4 months ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆26May 8, 2024Updated 2 years ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆236May 9, 2026Updated 5 months ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- Visualization tool for (meta)genome assembly graphs☆50Updated this week
- Strain-level haplotyping for metagenomes with short or long-reads.☆71Apr 10, 2025Updated last year
- ☆10May 27, 2025Updated last year
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆49Sep 18, 2026Updated last month
- Fast sequence distance estimates☆35Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆38Apr 23, 2025Updated last year
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆227Oct 21, 2026Updated last week
- A eukaryotic genome annotation pipeline☆14Oct 20, 2026Updated last week
- QC cutoffs for different genomes.☆19Oct 21, 2026Updated last week
- Build phylogenomic datasets in seconds☆15Updated this week
- THRESHER is a framework that replaces fixed cutoffs with data-driven phylothresholds - the SNP thresholds corrected for phylogenetic topo…☆14Oct 17, 2026Updated last week