ykai16 / LollipopLinks
A machine-learning algorithm to predict CTCF-mediated long-range chromatin interactions
☆17Updated 7 years ago
Alternatives and similar repositories for Lollipop
Users that are interested in Lollipop are comparing it to the libraries listed below
Sorting:
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆20Updated 3 months ago
- Motif Scan and Enrichment Analysis (MoSEA)☆17Updated 5 years ago
- Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivi…☆19Updated 7 years ago
- ☆36Updated 3 years ago
- Saluki, a method to predict mRNA half-lives from sequence☆27Updated 3 years ago
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Updated 5 years ago
- ☆18Updated last year
- ☆18Updated 3 years ago
- ☆49Updated 3 years ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15Updated 3 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated last month
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- A Python3-base pipeline for translated circular RNA(circRNA) identification☆18Updated last month
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆41Updated 2 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆39Updated last year
- An unbiased method for genome-wide CBE off-targets assessment☆13Updated 2 years ago
- splicing and feature maps for RBPs☆25Updated 3 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 4 months ago
- Predicting gene expression levels from genomic sequences☆55Updated 5 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated last year
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- Extract data quickly from Juicebox via straw☆69Updated 7 months ago
- Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning☆17Updated 4 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆29Updated this week
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆31Updated last year
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆71Updated 2 years ago
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago