CollepardoLab / CollepardoLab_Chromatin_ModelLinks
Source code for "Nucleosome plasticity is a critical element of chromatin liquid–liquid phase separation and multivalent nucleosome interactions".
☆12Updated 3 years ago
Alternatives and similar repositories for CollepardoLab_Chromatin_Model
Users that are interested in CollepardoLab_Chromatin_Model are comparing it to the libraries listed below
Sorting:
- ☆17Updated 3 weeks ago
- Generate Ramachandran plots for single PDB structure and as heatmap for MD trajectory☆11Updated 3 years ago
- An extension to the MDAnalysis library providing support for dealing with structural ensembles. There is currently support for calculatin…☆16Updated 7 years ago
- Open Source Protein REdesign for You v3☆56Updated 2 months ago
- An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM☆38Updated 7 months ago
- LASSI - Lattice Simulation Engine For Stickers And Spacer Interactions☆19Updated 4 months ago
- A platform to do RNA science☆27Updated 4 years ago
- A fast and simple Molecular Dynamics tutorial using GROMACS and PACKMOL.☆37Updated 2 years ago
- A Python platform for Structural Bioinformatics☆58Updated 10 months ago
- ☆39Updated 4 years ago
- An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM☆19Updated last week
- A mirror of official bio3d development site at Bitbucket: https://bitbucket.org/Grantlab/bio3d. See also bio3d website: http://thegrantl…☆26Updated 2 years ago
- ☆17Updated 3 months ago
- The DSSP building software☆48Updated 2 years ago
- Simulation code for the prediction of RNA structures.☆13Updated last year
- analyse PDB files, run molecular-dynamics & analyse trajectories☆62Updated 7 years ago
- Printing text using protein structures☆14Updated 4 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆65Updated 2 weeks ago
- 4D Genome Reconstruction and Dynamics Prediction: Maximum Entropy Based HI-C/Distance Map - Polymer Physics - Structures Method☆13Updated 3 weeks ago
- Martini Workshop: Simulating a Minimal Bacterial Cell☆14Updated last year
- Self explained tutorial for molecular dynamics simulation using gromacs☆41Updated last year
- Tutorial on how to use Ginkgo AI embedding APIs for scientific problems☆19Updated last year
- A VMD script to calculate side-chain and backbone dihedrals (torsion angles)☆14Updated 9 years ago
- ☆30Updated 8 months ago
- ☆18Updated 3 years ago
- To analyze fluctuations in DNA or RNA structures in molecular dynamics trajectories.☆27Updated 9 months ago
- Framework for the rapid modeling glycans and glycoproteins.☆31Updated 2 years ago
- Automated omics-scale protein modeling and simulation setup.☆53Updated 4 years ago
- A wxPython graphical interface for the PyRosetta and Rosetta protein modeling suites☆29Updated 7 years ago
- Python library to run structure based model (SBM) simulations using the OpenMM toolkit☆23Updated 3 years ago