Alternatives and similar repositories for CollepardoLab_Chromatin_Model

Users that are interested in CollepardoLab_Chromatin_Model are comparing it to the libraries listed below

• junioreif / OpenMiChroM
  ☆17Updated 4 months ago
• encore-similarity / encore
  An extension to the MDAnalysis library providing support for dealing with structural ensembles. There is currently support for calculatin…
  ☆15Updated 7 years ago
• cabb99 / open3spn2
  An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM
  ☆18Updated 3 months ago
• Pappulab / LASSI
  LASSI - Lattice Simulation Engine For Stickers And Spacer Interactions
  ☆18Updated 7 months ago
• npschafer / openawsem
  An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM
  ☆36Updated 2 months ago
• anyuzx / HIPPS-DIMES
  Maximum Entropy Based HI-C/Distance Map - Polymer Physics - Structures Method
  ☆13Updated this week
• pamellaccar / gromacs_with_packmol
  A fast and simple Molecular Dynamics tutorial using GROMACS and PACKMOL.
  ☆36Updated 2 years ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆57Updated 3 weeks ago
• graik / biskit
  A Python platform for Structural Bioinformatics
  ☆57Updated 4 months ago
• boscoh / pdbremix
  analyse PDB files, run molecular-dynamics & analyse trajectories
  ☆61Updated 7 years ago
• ZhangGroup-MITChemistry / DRAGON
  ☆12Updated 2 years ago
• pritampanda15 / Molecular-Dynamics
  Self explained tutorial for molecular dynamics simulation using gromacs
  ☆27Updated 8 months ago
• JoaoRodrigues / git-cheat-sheet
  A simple Git cheat sheet
  ☆7Updated 5 years ago
• Grantlab / bio3d
  A mirror of official bio3d development site at Bitbucket: https://bitbucket.org/Grantlab/bio3d. See also bio3d website: http://thegrantl…
  ☆24Updated 2 years ago
• ajasja / calculate_dihedrals
  A VMD script to calculate side-chain and backbone dihedrals (torsion angles)
  ☆14Updated 9 years ago
• gregorpatof / nrgten_package
  Najmanovich Research Group Toolkit for Elastic Networks
  ☆11Updated 2 years ago
• donaldlab / OSPREY3
  Open Source Protein REdesign for You v3
  ☆53Updated last month
• DeltaGroupNJUPT / QuickVina2-GPU
  A heterogeneous OpenCL implementation of QuickVina2
  ☆14Updated 2 years ago
• open2c / polychrom
  Chromosome polymer simulations and in silico capture experiments
  ☆51Updated 2 weeks ago
• srnas / spqr
  Simulation code for the prediction of RNA structures.
  ☆11Updated 6 months ago
• marrink-lab / martini-workshop
  Martini Workshop: Simulating a Minimal Bacterial Cell
  ☆13Updated last year
• channotation / chap
  CHAP is a tool for the functional annotation of ion channel structures:
  ☆21Updated last year
• ncbi / SSDraw
  ☆85Updated last year
• ljocha / gromacs-plumed-docker
  ☆13Updated 5 months ago
• choderalab / ensembler
  Automated omics-scale protein modeling and simulation setup.
  ☆53Updated 3 years ago
• Faezov / PDBrenum
  ☆30Updated 2 months ago
• csb-toolbox / CSB
  A Python framework for structural bioinformatics.
  ☆13Updated last year
• normandavey / AlphaFold2-IDR-complex-prediction
  ☆40Updated 3 years ago
• Gscorreia89 / chemometrics-tutorials
  ☆15Updated 2 years ago
• mungpeter / RAMAplot
  Generate Ramachandran plots for single PDB structure and as heatmap for MD trajectory
  ☆9Updated 3 years ago