Simple web browser to visualize HiC tracks
☆19Dec 12, 2019Updated 6 years ago
Alternatives and similar repositories for HiCBrowser
Users that are interested in HiCBrowser are comparing it to the libraries listed below
Sorting:
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆268Jul 17, 2025Updated 8 months ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- scripts for analyzing the CVDC data.☆20Dec 5, 2019Updated 6 years ago
- Galaxy Docker Image for the HiCExplorer☆11Mar 3, 2019Updated 7 years ago
- R package to evaluate the reproducibility of Hi-C data☆27Jun 23, 2023Updated 2 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Sep 26, 2024Updated last year
- QC report generator for Hi-C pairs file☆13Sep 14, 2020Updated 5 years ago
- ☆12May 26, 2020Updated 5 years ago
- This is a one day intro to Shiny workshop for the R Conference 2020.☆16Oct 3, 2022Updated 3 years ago
- Spectral and reproducibility analysis of Hi-C contact maps☆13Mar 18, 2021Updated 5 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26May 21, 2018Updated 7 years ago
- Data visualization with R☆12Dec 12, 2020Updated 5 years ago
- ☆11May 4, 2021Updated 4 years ago
- Builds a docker container wrapping higlass-server and higlass-client in nginx☆32May 31, 2022Updated 3 years ago
- R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface☆16Jan 26, 2021Updated 5 years ago
- Visualization and analysis software for Hi-C data -☆288Aug 6, 2024Updated last year
- python module to plot beautiful and highly customizable genome browser tracks☆867Jul 10, 2024Updated last year
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Sep 28, 2022Updated 3 years ago
- Readability enhancement tool for bioinformatics data file format☆29Jan 9, 2020Updated 6 years ago
- A user-friendly tool to screen antimicrobial resistance in fungal genomes☆18Aug 29, 2025Updated 6 months ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆45Dec 17, 2025Updated 3 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Jul 5, 2021Updated 4 years ago
- Repo for a workshops and presentations about ROS2 and Python☆12Mar 14, 2025Updated last year
- Tools for handling HiC and 5C data☆24Feb 5, 2024Updated 2 years ago
- ☆14May 2, 2021Updated 4 years ago
- An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads☆13Mar 11, 2026Updated last week
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆189Jul 13, 2020Updated 5 years ago
- Package for analysis and characterization of differential TADs☆26Apr 25, 2022Updated 3 years ago
- A transposition caller.☆12Oct 5, 2023Updated 2 years ago
- A One-Click System for Analyzing Loop-Resolution Hi-C Experiments☆476Aug 31, 2025Updated 6 months ago
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Jun 5, 2021Updated 4 years ago
- methods for orphan gene prediction paper optimization☆25Dec 24, 2021Updated 4 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- Extract data quickly from Juicebox via straw☆69Apr 6, 2025Updated 11 months ago
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Oct 15, 2018Updated 7 years ago
- 3D de novo assembly (3D DNA) pipeline☆223Nov 29, 2023Updated 2 years ago
- Collection of R functions used in the Hochwagen Lab☆12Aug 4, 2025Updated 7 months ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year