Alternatives and similar repositories for biorxiv-cli

Users that are interested in biorxiv-cli are comparing it to the libraries listed below

• ericmjl / Circos
  ☆15Updated 3 years ago
• IlyaLab / CombiningDependentPvaluesUsingEBM
  Python, R and Matlab implementation of Brown's Method to combine dependent P-values
  ☆25Updated 7 years ago
• dhimmel / obonet
  OBO-formatted ontologies → networkx (Python 3)
  ☆150Updated 10 months ago
• jakelever / pubrunner
  A framework for keeping biomedical text mining result up-to-date
  ☆42Updated 5 years ago
• YeoLab / flotilla
  Reproducible machine learning analysis of gene expression and alternative splicing data
  ☆125Updated 2 years ago
• kylessmith / dynamicTreeCut
  Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.
  ☆41Updated 4 years ago
• david-r-cox / Gene2vec
  Vector space representation of genetic data
  ☆36Updated 9 years ago
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆42Updated 6 years ago
• krishnanlab / txt2onto
  Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.
  ☆27Updated last year
• biothings / mygene.py
  mygene is an easy-to-use Python wrapper to access MyGene.Info services.
  ☆97Updated last year
• EBISPOT / EFO-UKB-mappings
  ☆18Updated 6 years ago
• blekhmanlab / rxivist
  API providing access to papers and authors scraped from biorxiv.org
  ☆56Updated 2 years ago
• WGLab / EHR-Phenolyzer
  A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list
  ☆37Updated 2 years ago
• ueser / FIDDLE
  Flexible Integration of Data with Deep LEarning
  ☆51Updated 2 years ago
• lucapinello / Haystack
  Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
  ☆31Updated 8 years ago
• hms-dbmi / exac_browser
  Browser for ExAC consortium data
  ☆12Updated 8 years ago
• jmschrei / rambutan
  Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.
  ☆21Updated 7 years ago
• Bioconductor / GoogleGenomics
  [DEPRECATED] An R package for Google Genomics API queries.
  ☆45Updated 2 years ago
• greenelab / multi-plier
  An unsupervised transfer learning approach for rare disease transcriptomics
  ☆46Updated 6 years ago
• monarch-initiative / biolink-api
  API for linked biological knowledge
  ☆66Updated 3 years ago
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated 2 years ago
• snewhouse / enrichr-api
  python script to programmatically enrich your data using Enrichr API
  ☆12Updated 8 years ago
• jdrudolph / goenrich
  GO enrichment with python -- pandas meets networkx
  ☆88Updated 5 years ago
• nfusi / qvalue
  Converts p-values in q-values, see (Storey and Tibshirani, 2003)
  ☆29Updated 8 years ago
• Novartis / peax
  Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…
  ☆69Updated 3 years ago
• brentp / interlap
  fast, pure-python interval overlap testing
  ☆52Updated 5 years ago
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆67Updated 10 months ago
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated 6 months ago
• biothings / myvariant.py
  Python client for MyVariant.info web services.
  ☆23Updated last year
• jakelever / biowordlists
  Biomedical wordlists (of drugs, genes, etc) for several text mining projects
  ☆19Updated 2 years ago