johli / scramblerView external linksLinks
Interpretation by Deep Generative Masking for Biological Sequences
☆37Dec 9, 2021Updated 4 years ago
Alternatives and similar repositories for scrambler
Users that are interested in scrambler are comparing it to the libraries listed below
Sorting:
- ☆19Mar 21, 2024Updated last year
- Code for the Framepool model☆14Feb 1, 2025Updated last year
- Saluki, a method to predict mRNA half-lives from sequence☆27Oct 7, 2022Updated 3 years ago
- DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding☆13Nov 29, 2018Updated 7 years ago
- TF MOtif Discovery from Importance SCOres☆165Dec 14, 2025Updated 2 months ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Aug 13, 2024Updated last year
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆57Jul 3, 2019Updated 6 years ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆100Jan 31, 2026Updated 2 weeks ago
- SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.☆21Jan 17, 2024Updated 2 years ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆35May 28, 2024Updated last year
- Fast Inference of Networks from Directed Regulations☆22Dec 7, 2023Updated 2 years ago
- ☆15May 22, 2025Updated 8 months ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆43Jul 3, 2025Updated 7 months ago
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated last year
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆12Dec 11, 2025Updated 2 months ago
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆17Jan 7, 2020Updated 6 years ago
- ☆16Sep 8, 2024Updated last year
- ☆12May 27, 2021Updated 4 years ago
- ☆14May 14, 2025Updated 9 months ago
- Deep Exploration Networks - Diverse Deep Generative Models for DNA, RNA and Protein Sequences☆31Oct 1, 2021Updated 4 years ago
- ☆12Nov 22, 2024Updated last year
- SmallSeqFlow: A streamlined, notebook-based bulk RNA-seq analysis pipeline optimized for small-sample studies with modular extensions.☆17Feb 23, 2025Updated 11 months ago
- Fast-ish (and correct!) quantile normalization in Python.☆31Jun 5, 2025Updated 8 months ago
- ☆52Nov 14, 2023Updated 2 years ago
- Codon optimizer for tissue-specific expression☆17Sep 26, 2024Updated last year
- Concise: Keras extension for regulatory genomics☆35Dec 26, 2022Updated 3 years ago
- Drug Discovery under Covariate Shift with Domain-Informed Prior Distributions over Functions☆24Jul 13, 2023Updated 2 years ago
- Python wrapper for MaxEntScan to calculate splice site strength.☆17Jul 8, 2022Updated 3 years ago
- A deep learning method for sgRNA off-target propensity prediction.☆15Mar 17, 2020Updated 5 years ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Dec 10, 2024Updated last year
- ☆42Updated this week
- Multi-task and masked language model-based protein sequence embedding models.☆105Jun 16, 2021Updated 4 years ago
- Repository for mRNA Paper and CodonBERT publication.☆142Jun 12, 2024Updated last year
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Jun 27, 2025Updated 7 months ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆40Oct 1, 2021Updated 4 years ago
- This repository hosts a minimal version of a Python API for BPNet.☆55Jan 24, 2026Updated 3 weeks ago
- A network-based approach for exon set enrichment☆15Jul 16, 2025Updated 6 months ago
- Container class to represent genomic locations and support genomic analysis☆27Jan 26, 2026Updated 2 weeks ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Jun 28, 2024Updated last year