johli / scrambler
Interpretation by Deep Generative Masking for Biological Sequences
☆37Updated 3 years ago
Alternatives and similar repositories for scrambler:
Users that are interested in scrambler are comparing it to the libraries listed below
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆44Updated 5 years ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆23Updated 10 months ago
- ☆33Updated last month
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆44Updated 6 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆65Updated 2 years ago
- GraphPart, a data partitioning method for ML on biological sequences☆24Updated last year
- Evolutionary velocity with protein language models☆84Updated last year
- ☆20Updated 2 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆57Updated 3 years ago
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆17Updated 7 months ago
- Arnie-based DegScore tool.☆23Updated 2 years ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆50Updated 8 months ago
- Promoter activity measurement and modeling; artificial promoter design and testing☆12Updated last year
- Comprehensive Python client for the Uniprot REST API☆45Updated 6 months ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆34Updated 3 months ago
- iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…☆29Updated last year
- Neural networks for deep mutational scanning data☆67Updated 3 months ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆17Updated 2 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆65Updated last year
- Knowledge-primed neural networks☆35Updated last year
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆46Updated last year
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- Feature map and function annotation of Proteins☆31Updated 8 months ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆49Updated 9 months ago
- Draw RNA secondary structures in python.☆46Updated 5 months ago
- ☆71Updated last year
- ☆17Updated 10 months ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆92Updated 5 months ago
- Cross-protein transfer learning for variant effect prediction☆19Updated last year
- surrogate quantitative interpretability for deepnets☆20Updated 7 months ago