johli / scramblerLinks
Interpretation by Deep Generative Masking for Biological Sequences
☆37Updated 4 years ago
Alternatives and similar repositories for scrambler
Users that are interested in scrambler are comparing it to the libraries listed below
Sorting:
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆54Updated 6 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆65Updated 3 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- Arnie-based DegScore tool.☆27Updated 3 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆74Updated 2 years ago
- Evolutionary velocity with protein language models☆94Updated 2 weeks ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆43Updated 5 months ago
- ☆23Updated 2 years ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- surrogate quantitative interpretability for deepnets☆24Updated 4 months ago
- Function prediction using a deep ontology-aware classifier☆85Updated 3 years ago
- ☆83Updated 2 years ago
- Species-aware DNA language modeling☆18Updated 2 years ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆42Updated last year
- ☆21Updated 3 years ago
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆41Updated 9 months ago
- ☆36Updated 11 months ago
- Fully convolutional deep learning variant effect predictor architecture☆23Updated last year
- Code for the analyses in the human reference interactome paper.☆28Updated 3 years ago
- Promoter activity measurement and modeling; artificial promoter design and testing☆13Updated 2 years ago
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆36Updated 2 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆20Updated 3 years ago
- ☆18Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆58Updated last week
- Comprehensive Python client for the Uniprot REST API☆54Updated 2 months ago
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆96Updated 2 years ago
- Draw RNA secondary structures in python.☆49Updated 6 months ago
- ☆59Updated 8 years ago
- ☆49Updated last year
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year