julianeweller / MinsePIELinks
Modelling insertion efficiency for Prime Insertion Experiments
☆13Updated last year
Alternatives and similar repositories for MinsePIE
Users that are interested in MinsePIE are comparing it to the libraries listed below
Sorting:
- CRISPR Indel, base edit analysis☆10Updated 5 years ago
- Splits fastq files evenly☆22Updated 5 years ago
- off-targeting assessment of Cas9 gRNAs☆13Updated 4 years ago
- Comprehensive and scalable differential splicing analyses☆17Updated 6 months ago
- CHANGE-seq analysis pipeline☆11Updated 4 months ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆13Updated 7 months ago
- Saluki, a method to predict mRNA half-lives from sequence☆25Updated 2 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 7 months ago
- ☆18Updated last year
- Species-aware DNA language models capture regulatory elements and their evolution☆24Updated 2 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 7 months ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 5 months ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated 10 months ago
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning☆17Updated 4 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆31Updated last year
- A neural network model to predict splice site usage and splicing-altering mutations☆15Updated last month
- Generate robust DNA barcode sets☆32Updated last year
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆18Updated last month
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆28Updated 7 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆14Updated last month
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆54Updated 6 months ago
- ☆19Updated 10 months ago
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆15Updated 7 years ago
- ☆39Updated 2 months ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Updated 4 years ago
- ☆76Updated 2 months ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 4 years ago
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year