julianeweller / MinsePIE
Modelling insertion efficiency for Prime Insertion Experiments
☆13Updated 9 months ago
Alternatives and similar repositories for MinsePIE:
Users that are interested in MinsePIE are comparing it to the libraries listed below
- CRISPR Indel, base edit analysis☆10Updated 4 years ago
- CHANGE-seq analysis pipeline☆11Updated 3 months ago
- Comparison of Adaptive Immune Receptor Repertoires☆26Updated this week
- Tool package to perform in-silico CRISPR analysis and assessment☆22Updated 8 months ago
- Comprehensive and scalable differential splicing analyses☆14Updated 7 months ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆11Updated 2 months ago
- iCodon customizes gene expression based on the codon composition☆14Updated last year
- off-targeting assessment of Cas9 gRNAs☆13Updated 3 years ago
- ☆14Updated 2 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆21Updated last year
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆20Updated last year
- ☆7Updated 4 years ago
- Software tool for the flexible design of pegRNAs and ngRNAs for prime editing!☆23Updated 2 years ago
- ☆33Updated 4 months ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- Saluki, a method to predict mRNA half-lives from sequence☆22Updated 2 years ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆14Updated 2 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆11Updated 5 months ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- ☆11Updated 5 years ago
- G4Hunter (2012_2015)- IECB - Bordeaux☆13Updated 4 years ago
- Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads☆17Updated last year
- A neural network model to predict splice site usage and splicing-altering mutations☆11Updated 2 weeks ago
- ☆14Updated 6 months ago
- ☆14Updated 2 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆36Updated 3 weeks ago
- Splits fastq files evenly☆19Updated 4 years ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆26Updated 6 years ago
- Computational framework to identify promoter sequences from RNA-seq datasets☆10Updated last year
- Read, parse and operate different multiple input file formats with OpenVariant☆11Updated last month