Parallel Block GZIP
☆50Aug 4, 2016Updated 10 years ago
Alternatives and similar repositories for pbgzip
Users that are interested in pbgzip are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 11 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Genomics database manager☆25Mar 3, 2014Updated 12 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆43Apr 20, 2016Updated 10 years ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆22Feb 10, 2019Updated 7 years ago
- ☆36Aug 13, 2020Updated 6 years ago
- reference free variant assembly☆34Jul 14, 2023Updated 3 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Sep 26, 2016Updated 9 years ago
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated last month
- A collection of CSV/TSV Utilities☆13Jun 2, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- alignment to variation graph inducer☆165Jul 29, 2026Updated last month
- Import a CWL workflow specification to Nextflow script (experimental)☆27Aug 9, 2018Updated 8 years ago
- my PhD thesis☆36Jul 10, 2019Updated 7 years ago
- ☆21Dec 26, 2025Updated 8 months ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆227Sep 18, 2025Updated 11 months ago
- Tools for bam file processing☆56Apr 20, 2015Updated 11 years ago
- ☆14Aug 30, 2025Updated last year
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago
- ☆22Jul 28, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Mar 17, 2016Updated 10 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Apr 8, 2016Updated 10 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- ☆15Aug 22, 2023Updated 3 years ago
- succinct labeled graphs with collections and paths☆15Nov 18, 2018Updated 7 years ago
- Docker containers that demonstrate a proof of concept bwa alignment workflow☆14Jan 13, 2015Updated 11 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 9 years ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 9 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 9 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A C++14 library for NGS data formats☆39Aug 5, 2019Updated 7 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Nov 6, 2025Updated 9 months ago
- A C library for handling bigWig files☆83Jan 17, 2025Updated last year
- Variant caller GUI + genetic disease analysis☆22Apr 29, 2020Updated 6 years ago
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 10 years ago