Parallel Block GZIP
☆50Aug 4, 2016Updated 9 years ago
Alternatives and similar repositories for pbgzip
Users that are interested in pbgzip are comparing it to the libraries listed below
Sorting:
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 10 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- ☆36Aug 13, 2020Updated 5 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Sep 26, 2016Updated 9 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 2 months ago
- A command line program for large scale buffering between piped programs☆16Nov 19, 2021Updated 4 years ago
- A collection of CSV/TSV Utilities☆13Jun 2, 2020Updated 5 years ago
- reference free variant assembly☆34Jul 14, 2023Updated 2 years ago
- succinct labeled graphs with collections and paths☆15Nov 18, 2018Updated 7 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Mar 17, 2016Updated 9 years ago
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆13Jan 19, 2023Updated 3 years ago
- Backend Server for CIViC Project☆39Jul 6, 2023Updated 2 years ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆225Sep 18, 2025Updated 5 months ago
- ☆22Oct 6, 2023Updated 2 years ago
- A C library for handling bigWig files☆81Jan 17, 2025Updated last year
- my PhD thesis☆36Jul 10, 2019Updated 6 years ago
- create a gemini-compatible database from a VCF☆55Jan 5, 2021Updated 5 years ago
- Population Reference Graphs for the HLA and MHC.☆35Dec 18, 2018Updated 7 years ago
- ☆22Jul 28, 2022Updated 3 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 6 years ago
- A pipeline to assess the quantification of transcripts.☆19Jun 6, 2022Updated 3 years ago
- sort genomic data☆36Nov 7, 2025Updated 3 months ago
- Squeakr: An Exact and Approximate k -mer Counting System☆86Feb 23, 2025Updated last year
- ☆21Dec 26, 2025Updated 2 months ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Aug 9, 2018Updated 7 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 8 years ago
- Run-length compressed BWT with LZ77 sampled suffix array☆10Apr 25, 2022Updated 3 years ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Nov 6, 2025Updated 3 months ago
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Sep 5, 2019Updated 6 years ago
- Curated collection of open-source bioinformatics tools☆28Feb 5, 2019Updated 7 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆30Dec 5, 2019Updated 6 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Sep 4, 2019Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jan 28, 2026Updated last month
- k-mer similarity analysis pipeline☆21Nov 20, 2025Updated 3 months ago