nh13 / pbgzip
Parallel Block GZIP
☆50Updated 8 years ago
Alternatives and similar repositories for pbgzip:
Users that are interested in pbgzip are comparing it to the libraries listed below
- utilities for indexing and sequence extraction from FASTA files☆59Updated 3 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Updated 5 years ago
- efficient alignment of strings to partially ordered string graphs☆33Updated 3 years ago
- a wee tool for random access into BGZF files.☆84Updated 6 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆51Updated last year
- Fast & accurate alignment of barcoded short-reads☆33Updated last year
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22Updated 6 years ago
- succinct labeled graphs with collections and paths☆15Updated 6 years ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 3 years ago
- Implicit Interval Tree with Interpolation Index☆41Updated 2 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated last month
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆43Updated 5 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Updated 9 years ago
- Histosketching Using Little Kmers☆56Updated last year
- Small general purpose library for C and Python with focus on bioinformatics.☆30Updated 2 years ago
- ☆28Updated last year
- Efficient, parallel compression for terabyte-scale data☆40Updated 2 months ago
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆30Updated 4 years ago
- A repository for generating strobemers and evalaution☆77Updated 11 months ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆40Updated 2 months ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 2 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago
- Fastq compression☆18Updated 5 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆37Updated last year
- Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"☆64Updated 4 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- ♥ Essential Functions for DNA Manipulation☆19Updated 8 months ago