nh13 / pbgzip
Parallel Block GZIP
☆49Updated 8 years ago
Related projects ⓘ
Alternatives and complementary repositories for pbgzip
- efficient alignment of strings to partially ordered string graphs☆33Updated 2 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 3 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 9 months ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 3 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆40Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Implicit Interval Tree with Interpolation Index☆41Updated 2 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 6 years ago
- Fast & accurate alignment of barcoded short-reads☆32Updated last year
- a wee tool for random access into BGZF files.☆84Updated 6 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆51Updated 2 years ago
- Read alignment with a multi-genome reference☆22Updated 4 years ago
- Substring index for paths in a graph☆60Updated 3 weeks ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 5 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆51Updated 8 months ago
- succinct labeled graphs with collections and paths☆15Updated 6 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆42Updated 5 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated last year
- ☆28Updated last year
- Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"☆64Updated 4 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆53Updated 4 years ago
- C++ wrapper to tabix indexer☆17Updated last year
- Small general purpose library for C and Python with focus on bioinformatics.☆29Updated 2 years ago
- A compressed, associative, exact, and weighted dictionary for k-mers.☆84Updated last month
- A repository for generating strobemers and evalaution☆77Updated 7 months ago
- FM-index representation of a de Bruijn graph☆27Updated 7 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- Lift-over alignments from variant-aware references☆34Updated last year
- Bam Read Index - Extract alignments from a bam file by readname☆24Updated 7 months ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago