s-andrews / FastQCLinks
A quality control analysis tool for high throughput sequencing data
☆530Updated last month
Alternatives and similar repositories for FastQC
Users that are interested in FastQC are comparing it to the libraries listed below
Sorting:
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆524Updated last week
- Transcript assembly and quantification for RNA-Seq☆459Updated 3 weeks ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆527Updated last week
- Tools to process and analyze deep sequencing data.☆733Updated last month
- ☆266Updated 3 weeks ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆433Updated last month
- The second version of the Kraken taxonomic sequence classification system☆823Updated last week
- Graph-based alignment (Hierarchical Graph FM index)☆510Updated last week
- The next version of bwa-mem☆779Updated 2 months ago
- Fast genome-wide functional annotation through orthology assignment☆649Updated 2 months ago
- Phylogenetic orthology inference for comparative genomics☆794Updated 2 months ago
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆476Updated this week
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆433Updated 8 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆868Updated 4 months ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆451Updated last year
- Mummer alignment tool☆524Updated 7 months ago
- A single molecule sequence assembler for genomes large and small.☆689Updated last week
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆676Updated 5 months ago
- SPAdes Genome Assembler☆866Updated 2 weeks ago
- hybrid assembly pipeline for bacterial genomes☆612Updated last year
- Python library to facilitate genome assembly, annotation, and comparative genomics☆851Updated 3 weeks ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆485Updated last month
- Bioinformatics code libraries and scripts☆542Updated last month
- A One-Click System for Analyzing Loop-Resolution Hi-C Experiments☆456Updated 2 weeks ago
- Plotting scripts for long read sequencing data☆498Updated 2 weeks ago
- Near-optimal RNA-Seq quantification☆698Updated 5 months ago
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆502Updated this week
- Cutadapt removes adapter sequences from sequencing reads☆561Updated last week
- Structural variation caller using third generation sequencing☆615Updated 3 weeks ago
- python module to plot beautiful and highly customizable genome browser tracks☆838Updated last year