FelixKrueger / TrimGaloreLinks
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
☆523Updated 5 months ago
Alternatives and similar repositories for TrimGalore
Users that are interested in TrimGalore are comparing it to the libraries listed below
Sorting:
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆431Updated 3 weeks ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆450Updated last year
- ☆263Updated last week
- Fast genome-wide functional annotation through orthology assignment☆645Updated 2 months ago
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆470Updated this week
- Transcript assembly and quantification for RNA-Seq☆459Updated last week
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆524Updated last month
- Tools for handling Unique Molecular Identifiers in NGS data sets☆517Updated last month
- parallel fastq-dump wrapper☆298Updated 2 years ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆429Updated 8 months ago
- Graph-based alignment (Hierarchical Graph FM index)☆509Updated 9 months ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆419Updated last year
- RNA-seq workflow using STAR and DESeq2☆345Updated last year
- Tools to process and analyze deep sequencing data.☆734Updated last month
- TransDecoder source☆296Updated this week
- An accurate GFF3/GTF lift over pipeline☆498Updated 2 years ago
- MACS -- Model-based Analysis of ChIP-Seq☆753Updated last month
- A quality control analysis tool for high throughput sequencing data☆526Updated 3 weeks ago
- Differential expression of RNA-seq data using the Negative Binomial☆408Updated 2 weeks ago
- Phylogenetic orthology inference for comparative genomics☆790Updated last month
- ☆396Updated 3 years ago
- Plotting scripts for long read sequencing data☆497Updated last week
- This Snakemake pipeline implements the GATK best-practices workflow☆257Updated 2 years ago
- Plot structural variant signals from many BAMs and CRAMs☆544Updated last year
- Rapid haploid variant calling and core genome alignment☆542Updated last year
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆273Updated last year
- ☆272Updated 9 months ago
- Intro to ChIPseq using HPC☆310Updated 2 years ago
- Trinity RNA-Seq de novo transcriptome assembly☆866Updated 6 months ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆396Updated 3 weeks ago