FelixKrueger / TrimGalore

Related projects ⓘ

Alternatives and complementary repositories for TrimGalore

• FelixKrueger / Bismark
  A tool to map bisulfite converted sequence reads and determine cytosine methylation states
  ☆393Updated last week
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆327Updated 3 months ago
• rvalieris / parallel-fastq-dump
  parallel fastq-dump wrapper
  ☆283Updated last year
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆289Updated last year
• deweylab / RSEM
  RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
  ☆421Updated 8 months ago
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆572Updated 6 months ago
• shenlab-sinai / ngsplot
  Quick mining and visualization of NGS data by integrating genomic databases
  ☆259Updated last year
• gpertea / stringtie
  Transcript assembly and quantification for RNA-Seq
  ☆384Updated last week
• usadellab / Trimmomatic
  ☆221Updated 5 months ago
• hbctraining / DGE_workshop
  ☆375Updated 2 years ago
• nf-core / sarek
  Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
  ☆410Updated this week
• nservant / HiC-Pro
  HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
  ☆386Updated 7 months ago
• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆437Updated 2 weeks ago
• ENCODE-DCC / atac-seq-pipeline
  ENCODE ATAC-seq pipeline
  ☆391Updated 4 months ago
• TransDecoder / TransDecoder
  TransDecoder source
  ☆276Updated last month
• DaehwanKimLab / hisat2
  Graph-based alignment (Hierarchical Graph FM index)
  ☆478Updated last week
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆389Updated this week
• nf-core / atacseq
  ATAC-seq peak-calling and QC analysis pipeline
  ☆188Updated this week
• ryanlayer / samplot
  Plot structural variant signals from many BAMs and CRAMs
  ☆530Updated 4 months ago
• CGATOxford / UMI-tools
  Tools for handling Unique Molecular Identifiers in NGS data sets
  ☆493Updated last month
• jtamames / SqueezeMeta
  A complete pipeline for metagenomic analysis
  ☆382Updated last week
• thelovelab / DESeq2
  Differential expression of RNA-seq data using the Negative Binomial
  ☆362Updated last week
• snakemake-workflows / dna-seq-gatk-variant-calling
  This Snakemake pipeline implements the GATK best-practices workflow
  ☆243Updated last year
• deeptools / deepTools
  Tools to process and analyze deep sequencing data.
  ☆684Updated this week
• hbctraining / DGE_workshop_salmon_online
  ☆178Updated 3 weeks ago
• mskcc / vcf2maf
  Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
  ☆375Updated 4 months ago
• NBISweden / AGAT
  Another Gtf/Gff Analysis Toolkit
  ☆464Updated last month
• broadinstitute / gtex-pipeline
  GTEx & TOPMed data production and analysis pipelines
  ☆342Updated 7 months ago
• Xinglab / rmats-turbo
  ☆232Updated this week
• biobakery / biobakery
  bioBakery tools for meta'omic profiling
  ☆262Updated last month