Alternatives and similar repositories for gcSV

Users that are interested in gcSV are comparing it to the libraries listed below

• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆35Updated last week
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆33Updated 4 years ago
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆22Updated last year
• human-pangenomics / hprc-tutorials
  ☆19Updated last year
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆47Updated 5 months ago
• 1kg-ont-vienna / sv-analysis
  SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
  ☆38Updated 9 months ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆29Updated last year
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆31Updated 7 months ago
• JustinChu / ntsm
  This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…
  ☆30Updated last year
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆30Updated last year
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆54Updated 11 months ago
• asylvz / SVarp
  Phased structural variant discovery in pangenomes
  ☆39Updated 2 months ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆28Updated last year
• ablab / stringdecomposer
  Tool for decomposition centromeric assemblies and long reads into monomers
  ☆37Updated 3 years ago
• gymrek-lab / LongTR
  Tandem repeat genotyping with long reads
  ☆35Updated 4 months ago
• lh3 / panmask
  Easy genomic regions for short-read variant calling
  ☆45Updated 5 months ago
• Markusjsommer / TD2
  TD2
  ☆31Updated 3 weeks ago
• PacificBiosciences / sawfish
  Joint structural variant and copy number variant caller for HiFi sequencing data
  ☆69Updated 3 months ago
• PacificBiosciences / MethBat
  A battery of methylation tools for PacBio HiFi reads
  ☆48Updated 2 months ago
• PacificBiosciences / trgt-denovo
  De novo tandem repeat calling from PacBio HiFi data
  ☆19Updated 2 months ago
• maickrau / ribotin
  ☆38Updated last month
• ACEnglish / adotto
  Working space for the GIAB TR benchmarking project
  ☆23Updated last year
• zhixingfeng / iGDA
  Detect and phase minor SNVs from long-read sequencing data
  ☆14Updated 4 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• GeneDx / pgr-tk-notebooks
  ☆16Updated 2 years ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆21Updated last year
• agshumate / LiftoffTools
  ☆29Updated 2 years ago
• tprodanov / locityper
  Targeted genotyper for complex polymorphic genes
  ☆33Updated this week
• farhangus / Sniffles2_plot
  ☆33Updated last year
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆53Updated 11 months ago