hitbc / gcSVLinks
☆21Updated 4 months ago
Alternatives and similar repositories for gcSV
Users that are interested in gcSV are comparing it to the libraries listed below
Sorting:
- ☆17Updated last year
- Kmer Analysis of Pileups for Genotyping☆30Updated this week
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated 10 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated last month
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 6 months ago
- Easy genomic regions for short-read variant calling☆15Updated last week
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- Tumour-only somatic mutation calling using long reads☆27Updated 7 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 7 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 2 weeks ago
- SV calling for diploid assemblies☆27Updated last year
- Phased structural variant discovery in pangenomes☆34Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated 2 weeks ago
- Working space for the GIAB TR benchmarking project☆21Updated 8 months ago
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- General purpose utility related to GAF files☆28Updated 3 weeks ago
- Variant annotation and merging pipeline☆36Updated 3 weeks ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 4 months ago
- De novo tandem repeat calling from PacBio HiFi data☆17Updated 2 weeks ago
- Phasing reads with secondary alignments☆18Updated 6 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 11 months ago
- ☆35Updated last week
- Genome assembly soft-masking using Red (REpeat Detector)☆17Updated 6 years ago
- Jupyter Notebooks Using PGR-TK for various human pangenome analysis tasks☆16Updated 2 years ago
- ☆30Updated 5 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆36Updated 4 months ago
- Tandem repeat genotyping with long reads☆28Updated last month
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated last week