mrvollger / NucFreq
☆35Updated last year
Alternatives and similar repositories for NucFreq:
Users that are interested in NucFreq are comparing it to the libraries listed below
- Draw a dot plot from a paf alignment☆27Updated 2 weeks ago
- ☆29Updated 3 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆36Updated last week
- ☆27Updated last year
- SV calling for diploid assemblies☆26Updated last year
- Statistics and analysis for variation graphs☆39Updated 4 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆37Updated 6 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆39Updated 4 months ago
- ☆30Updated 5 years ago
- ☆34Updated 2 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆26Updated 3 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- ☆23Updated 8 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated 7 months ago
- Toolkit for evolutionary analyses of linkage groups☆31Updated 9 months ago
- Identification of transposable element families from pangenome polymorphisms☆45Updated last month
- A genome assembly assessment pipeline.☆37Updated last year
- ☆42Updated 11 months ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.☆18Updated last year
- ☆20Updated 8 months ago
- Nextflow pipeline for scaffolding genome assemblies with Hi-C reads☆14Updated 4 months ago
- ☆32Updated this week
- FastK based version of Merqury☆24Updated this week
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated this week