Vabs-Net: Pre-Training Protein Bi-level Representation Through Span Mask Strategy On 3D Protein Chains
☆18Sep 12, 2024Updated last year
Alternatives and similar repositories for Vabs-Net
Users that are interested in Vabs-Net are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Jan 3, 2024Updated 2 years ago
- AAAI 2025☆16Dec 13, 2024Updated last year
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆42Jul 9, 2023Updated 2 years ago
- [ICML2025] The official implementation of "PolyConf: Unlocking Polymer Conformation Generation through Hierarchical Generative Models"☆35Mar 18, 2026Updated last month
- ☆11Dec 28, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Quasi-Wasserstein Loss for Learning Graph Neural Networks (QW loss)☆10May 20, 2024Updated last year
- Learnable Global Pooling Layers Based on Regularized Optimal Transport (ROT)☆16Mar 17, 2024Updated 2 years ago
- Official repository of "Multi-level Interaction Modeling for Protein Mutational Effect Prediction"☆11Jun 30, 2024Updated last year
- This project made use of both intensity and phase information to recognize orbital angular momentum mode.☆36Jul 8, 2024Updated last year
- Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models☆81Sep 12, 2024Updated last year
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆51Dec 3, 2024Updated last year
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆252Jul 24, 2025Updated 9 months ago
- The Family of Diffusion Protein Language Models (DPLM)☆325Jul 25, 2025Updated 9 months ago
- ☆43Mar 23, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Implementations of the renormalization group-based diffusion model (RGDM).☆16Mar 10, 2025Updated last year
- [NeurIPS 2024] MSA generative pretraining for advancing protein structure prediction☆35Mar 18, 2025Updated last year
- ☆15Jan 31, 2026Updated 3 months ago
- [CIKM2023] The official implementation of "MPerformer: An SE(3) Transformer-based Molecular Perceptron"☆28Nov 12, 2024Updated last year
- ☆77Mar 11, 2024Updated 2 years ago
- Official code base for "General Binding Affinity Guidance for Diffusion Models in Structure-Based Drug Design"☆13Jul 18, 2025Updated 9 months ago
- protein conformational spaces meet machine learning☆53Mar 26, 2026Updated last month
- DualBind is a 3D structure-based deep learning model with a dual-loss framework for accurate and fast protein-ligand binding affinity pre…☆20Oct 21, 2025Updated 6 months ago
- Molecular dynamics without molecules: searching the conformational space of proteins with generative neural networks☆11Jun 13, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- a collection of awesome autoregressive visual generation models☆80Apr 17, 2025Updated last year
- ☆15Nov 13, 2023Updated 2 years ago
- Apo2Mol: 3D Molecule Generation via Dynamic Pocket-Aware Diffusion Models☆31Dec 23, 2025Updated 4 months ago
- ☆32Dec 17, 2025Updated 4 months ago
- eXtended Equivairant Graph Neural Network☆15Jul 23, 2025Updated 9 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆79Jan 27, 2026Updated 3 months ago
- ☆20Mar 20, 2025Updated last year
- NeuralMD for Protein-ligand Binding Simulation, Nature Communicaitons 2025 https://www.nature.com/articles/s41467-025-67808-z☆48Nov 4, 2025Updated 6 months ago
- Structure-based fragment identification in latent space☆30Mar 4, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Pretrainable geometric graph neural network for antibody affinity maturation☆76Mar 18, 2025Updated last year
- Official implementation of geometric algebra transformers for large biomedical surface and volume meshes (LaB-GATr)☆36Dec 3, 2025Updated 5 months ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆271Apr 27, 2025Updated last year
- Official implementation for the paper "EBMDOCK: NEURAL PROBABILISTIC PROTEIN-PROTEIN DOCKING VIA A DIFFERENTIABLE ENERGY-BASED MODEL" (IC…☆14Apr 24, 2024Updated 2 years ago
- Residue Level Alignment☆22Nov 21, 2024Updated last year
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆55Dec 9, 2025Updated 5 months ago
- Pretrained METL models with minimal dependencies☆17Sep 18, 2025Updated 7 months ago