Heisenburger2020 / Vabs-NetLinks
Vabs-Net: Pre-Training Protein Bi-level Representation Through Span Mask Strategy On 3D Protein Chains
☆18Updated last year
Alternatives and similar repositories for Vabs-Net
Users that are interested in Vabs-Net are comparing it to the libraries listed below
Sorting:
- Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models☆75Updated last year
- ☆35Updated 10 months ago
- Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)☆105Updated 9 months ago
- The official implementation of the AAAI'24 paper Cross-Gate MLP with Protein Complex Invariant Embedding is A One-Shot Antibody Designer.☆11Updated 2 years ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆101Updated 8 months ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆61Updated last year
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆101Updated 2 years ago
- ☆10Updated last year
- Codes for our paper "UniMoMo: Unified Generative Modeling of 3D Molecules for De Novo Binder Design" (ICML 2025)☆80Updated last month
- [ICLR 2024] Protein-Ligand Interaction Prior for Binding-aware 3D Molecule Diffusion Models☆53Updated last year
- ☆77Updated 11 months ago
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆37Updated 2 years ago
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆73Updated 2 years ago
- This repo contains the codes for our paper "Generalist Equivariant Transformer Towards 3D Molecular Interaction Learning" (ICML 2024).☆39Updated 6 months ago
- Learning Harmonic Molecular Representations on Riemannian Manifold, ICLR, 2023☆25Updated 2 years ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆124Updated 11 months ago
- ☆55Updated 8 months ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆101Updated last year
- ☆96Updated last year
- Implementation of MapDiff: "Mask-prior-guided denoising diffusion improves inverse protein folding" in PyTorch☆43Updated 6 months ago
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Updated 2 years ago
- Papers about Structure-based Drug Design (SBDD)☆139Updated 4 months ago
- ☆23Updated last year
- NeurIPS24: Aligning Target-Aware Molecule Diffusion Models with Exact Energy Optimization☆41Updated 9 months ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆80Updated last year
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆47Updated last year
- Official code for "Integration of pre-trained protein language models into geometric deep learning networks"☆23Updated 7 months ago
- ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)☆111Updated 2 years ago
- MolDiff: Addressing the Atom-Bond Inconsistency Problem in 3D Molecule Diffusion Generation☆81Updated last year
- ☆17Updated last year