Vabs-Net: Pre-Training Protein Bi-level Representation Through Span Mask Strategy On 3D Protein Chains
☆17Sep 12, 2024Updated 2 years ago
Alternatives and similar repositories for Vabs-Net
Users that are interested in Vabs-Net are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Jan 3, 2024Updated 2 years ago
- AAAI 2025☆17Dec 13, 2024Updated last year
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆41Jul 9, 2023Updated 3 years ago
- official implementation of MGA-CLAP (ACM MM 2024)☆28Oct 25, 2024Updated last year
- ☆11Dec 28, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A Quasi-Wasserstein Loss for Learning Graph Neural Networks (QW loss)☆10May 20, 2024Updated 2 years ago
- Learnable Global Pooling Layers Based on Regularized Optimal Transport (ROT)☆16Mar 17, 2024Updated 2 years ago
- Official repository of "Multi-level Interaction Modeling for Protein Mutational Effect Prediction"☆11Jun 30, 2024Updated 2 years ago
- [Nature Machine Intelligence], the first open de novo sequencing and open database search rescoring deep learning model.☆46May 30, 2026Updated 3 months ago
- This project made use of both intensity and phase information to recognize orbital angular momentum mode.☆37Jul 8, 2024Updated 2 years ago
- Scaling Long-Horizon SWE Environments☆47Aug 7, 2026Updated last month
- Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models☆90Sep 12, 2024Updated 2 years ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆54Dec 3, 2024Updated last year
- [Nature Communications] The implementation for the paper "An equivariant pretrained transformer for unified 3D molecular representation l…☆18Jun 25, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- [ICML2025] The official implementation of "PolyConf: Unlocking Polymer Conformation Generation through Hierarchical Generative Models"☆37Mar 18, 2026Updated 6 months ago
- Codebase of the paper "Aligning Protein Conformation Ensemble Generation with Physical Feedback" (ICML 2025)☆18Jul 6, 2025Updated last year
- The Family of Diffusion Protein Language Models (DPLM)☆345Jul 25, 2025Updated last year
- ☆21Jan 31, 2026Updated 7 months ago
- [CIKM2023] The official implementation of "MPerformer: An SE(3) Transformer-based Molecular Perceptron"☆27Nov 12, 2024Updated last year
- [NeurIPS 2024] MSA generative pretraining for advancing protein structure prediction☆34Mar 18, 2025Updated last year
- ☆50Jul 21, 2026Updated 2 months ago
- Molecular dynamics without molecules: searching the conformational space of proteins with generative neural networks☆10Jun 13, 2022Updated 4 years ago
- ☆77Mar 11, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- eXtended Equivairant Graph Neural Network☆17Jul 23, 2025Updated last year
- a collection of awesome autoregressive visual generation models☆82Apr 17, 2025Updated last year
- ☆15Nov 13, 2023Updated 2 years ago
- ☆33Dec 17, 2025Updated 9 months ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆168Mar 28, 2026Updated 5 months ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆275Jul 24, 2025Updated last year
- protein conformational spaces meet machine learning☆52Sep 15, 2026Updated last week
- The code for NeurIPS 2023 paper DSR☆14Oct 8, 2023Updated 2 years ago
- Pretrained METL models with minimal dependencies☆16Sep 16, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆13Nov 14, 2025Updated 10 months ago
- Biomolecular co-folding, binder filtering, and nanobody design☆92Jun 28, 2026Updated 3 months ago
- Official implementation of geometric algebra transformers for large biomedical surface and volume meshes (LaB-GATr)☆38Dec 3, 2025Updated 9 months ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆279Apr 27, 2025Updated last year
- Residue Level Alignment☆22Nov 21, 2024Updated last year
- Official implementation for the paper "EBMDOCK: NEURAL PROBABILISTIC PROTEIN-PROTEIN DOCKING VIA A DIFFERENTIABLE ENERGY-BASED MODEL" (IC…☆14Apr 24, 2024Updated 2 years ago
- Code fo ICLR2025 paper "A Simple yet Effective DDG Predictor is An Unsupervised Antibody Optimizer and Explainer"☆25Jul 18, 2025Updated last year