Vabs-Net: Pre-Training Protein Bi-level Representation Through Span Mask Strategy On 3D Protein Chains
☆17Sep 12, 2024Updated 2 years ago
Alternatives and similar repositories for Vabs-Net
Users that are interested in Vabs-Net are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Jan 3, 2024Updated 2 years ago
- AAAI 2025☆16Dec 13, 2024Updated last year
- official implementation of MGA-CLAP (ACM MM 2024)☆29Oct 25, 2024Updated 2 years ago
- VenusFold☆16Sep 14, 2026Updated last month
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆55Dec 3, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- [Nature Machine Intelligence], the first open de novo sequencing and open database search rescoring deep learning model.☆46May 30, 2026Updated 5 months ago
- ☆11Dec 28, 2023Updated 2 years ago
- Official Implementation of Paper: "OAT-FM: Optimal Acceleration Transport for Improved Flow Matching".☆12Oct 15, 2025Updated last year
- This project made use of both intensity and phase information to recognize orbital angular momentum mode.☆37Jul 8, 2024Updated 2 years ago
- J-BHI 2024: Exploiting Hierarchical Interactions for Protein Surface Learning☆17Jan 21, 2024Updated 2 years ago
- Learnable Global Pooling Layers Based on Regularized Optimal Transport (ROT)☆16Mar 17, 2024Updated 2 years ago
- Scaling Long-Horizon SWE Environments☆50Aug 7, 2026Updated 3 months ago
- Official repository of "Multi-level Interaction Modeling for Protein Mutational Effect Prediction"☆11Jun 30, 2024Updated 2 years ago
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆42Jul 9, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- [ICML2025] The official implementation of "PolyConf: Unlocking Polymer Conformation Generation through Hierarchical Generative Models"☆37Mar 18, 2026Updated 7 months ago
- Codebase of the paper "Aligning Protein Conformation Ensemble Generation with Physical Feedback" (ICML 2025)☆18Jul 6, 2025Updated last year
- Multimodal Pretraining for Unsupervised Protein Representation Learning☆22Jul 30, 2024Updated 2 years ago
- The Family of Diffusion Protein Language Models (DPLM)☆350Jul 25, 2025Updated last year
- Code for ICML 2024 paper "Learning to Predict Mutational Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical P…☆43Oct 8, 2024Updated 2 years ago
- ☆21Jan 31, 2026Updated 9 months ago
- [Nature Communications] The implementation for the paper "An equivariant pretrained transformer for unified 3D molecular representation l…☆18Jun 25, 2026Updated 4 months ago
- [CIKM2023] The official implementation of "MPerformer: An SE(3) Transformer-based Molecular Perceptron"☆27Nov 12, 2024Updated last year
- [ICLR 2023] "HotProtein: A Novel Framework for Protein Thermostability Prediction and Editing" by Tianlong Chen*, Chengyue Gong*, Daniel …☆32Mar 19, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models☆90Sep 12, 2024Updated 2 years ago
- ☆52Jul 21, 2026Updated 3 months ago
- ☆77Mar 11, 2024Updated 2 years ago
- eXtended Equivairant Graph Neural Network☆17Jul 23, 2025Updated last year
- ☆15Nov 13, 2023Updated 2 years ago
- a collection of awesome autoregressive visual generation models☆83Apr 17, 2025Updated last year
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆281Jul 24, 2025Updated last year
- A benchmark dataset for epitope-specific antibody design [Transactions on ML Research - TMLR]☆43Jun 9, 2026Updated 4 months ago
- Code for Paper "EquiDiff: A Conditional Equivariant Diffusion Model For Trajectory Prediction"☆13Mar 29, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The official code base for paper AAAI2026 <MedLA: A Logic-Driven Multi-Agent Framework for Complex Medical Reasoning with Large Language …☆27Feb 2, 2026Updated 9 months ago
- Implementation of the paper: Multivector Neurons: Better and Faster O(n)-Equivariant Clifford Graph Neural Networks☆11Jun 8, 2024Updated 2 years ago
- ☆13Jun 8, 2026Updated 4 months ago
- Code fo ICLR2025 paper "A Simple yet Effective DDG Predictor is An Unsupervised Antibody Optimizer and Explainer"☆26Jul 18, 2025Updated last year
- Implementation for ICLR 2025 oral paper "Steering Protein Family Design Through Profile Bayesian Flow"☆11May 27, 2025Updated last year
- [ICML2025] The official implementation of "WGFormer: An SE(3)-Transformer Driven by Wasserstein Gradient Flows for Molecular Ground-State…☆31Mar 18, 2026Updated 7 months ago
- Official implementation for the paper "EBMDOCK: NEURAL PROBABILISTIC PROTEIN-PROTEIN DOCKING VIA A DIFFERENTIABLE ENERGY-BASED MODEL" (IC…☆15Apr 24, 2024Updated 2 years ago