yangkky / gpmodelLinks
Functions and classes for doing Gaussian process models of proteins
☆11Updated 7 years ago
Alternatives and similar repositories for gpmodel
Users that are interested in gpmodel are comparing it to the libraries listed below
Sorting:
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 6 years ago
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆41Updated 7 months ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- ☆32Updated 3 weeks ago
- Parameter-efficient embeddings for proteins, pretrained using a contrastive loss.☆30Updated 2 months ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- ☆26Updated 5 years ago
- PLM-interact: extending protein language models to predict protein-protein interactions.☆29Updated last month
- Predict the structure of immune receptor proteins☆55Updated 11 months ago
- Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your co…☆73Updated 2 years ago
- Fast and accurate protein structure prediction☆55Updated 8 months ago
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆27Updated 2 years ago
- This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.☆34Updated 10 months ago
- a Transformer-based neural network for generating highly optimized protein sequences called Regularized Latent Space Optimization (RELSO)☆89Updated 2 years ago
- ☆16Updated 2 years ago
- iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…☆33Updated 2 years ago
- ☆43Updated 2 weeks ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆34Updated last month
- Code used in the manuscript for De Novo Design of Bioactive Protein Switches☆16Updated 6 years ago
- ☆18Updated 7 months ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆53Updated 2 months ago
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Updated 4 years ago
- ☆30Updated 4 months ago
- ☆18Updated 7 years ago
- Unsupervised neural network for learning embeddings of GO terms.☆18Updated 3 years ago
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆18Updated 4 years ago
- ☆44Updated last year
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆25Updated last year
- Python interface to cd-hit☆10Updated 6 years ago
- Information sharing portal about nCov/SARS/MERS for drug discovery☆37Updated last year