Huatsing-Lau / PPB-Affinity-DataPrepWorkflowLinks
workflow used to prepare PPB-Affinity database
☆28Updated last year
Alternatives and similar repositories for PPB-Affinity-DataPrepWorkflow
Users that are interested in PPB-Affinity-DataPrepWorkflow are comparing it to the libraries listed below
Sorting:
- Baseline model for PPB-Affinity benchmark data☆34Updated 8 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆37Updated last year
- Code for humanization of antibody and nanobody☆74Updated 5 months ago
- Evaluating Protein Binding Interfaces with Transformer Networks☆47Updated 2 years ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆52Updated 2 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆61Updated 8 months ago
- ☆40Updated last year
- ☆30Updated 4 months ago
- ☆61Updated last year
- ☆37Updated 2 years ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆66Updated last month
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆61Updated 2 years ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆47Updated last year
- A benchmark for 3D biomolecular structure prediction models☆69Updated 9 months ago
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆49Updated 2 months ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆108Updated 2 weeks ago
- RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences☆27Updated 5 months ago
- Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction☆87Updated 4 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆53Updated 2 weeks ago
- ☆40Updated 6 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆33Updated 2 years ago
- ☆25Updated 8 months ago
- Extension of ThermoMPNN for double mutant predictions☆53Updated 4 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆91Updated 8 months ago
- ☆45Updated 10 months ago
- Predicting mutational effects on protein binding from folding energy. ICML 2025.☆40Updated 6 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆70Updated 7 months ago
- ☆30Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆85Updated last year
- Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning☆22Updated 10 months ago